RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 IGF2P01344 180 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 ADORA3P0DMS8 318 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 ITGA2P17301 1181 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 RRM2P31350 389 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 UGT2B10P36537 528 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 GPR4P46093 362 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 CLDN17P56750 224 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 PUDPQ08623 228 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 PPP1R8Q12972 351 aaKnown RBP17.27■□□□□ 0.36
CLN3-225ENST00000566824 TSPO2Q5TGU0 170 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 AQP12AQ8IXF9 295 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 APH1AQ96BI3 265 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 EMC6Q9BV81 110 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 ANKRD19PQ9H560 264 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 MAGIXQ9H6Y5 334 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 SLC7A10Q9NS82 523 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 MED29Q9NX70 200 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 ELOVL5Q9NYP7 299 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 CRIM1Q9NZV1 1036 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 FOXD3Q9UJU5 478 aaPredicted RBP17.27■□□□□ 0.36
CLN3-225ENST00000566824 HRNRQ86YZ3 2850 aaPredicted RBP17.27■□□□□ 0.35
CLN3-225ENST00000566824 TCRBV3S1A0A5B6 114 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 BLOC1S5-TXNDC5H3BN57 136 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 ZNF432O94892 652 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 GADD45GO95257 159 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 TSPAN19P0C672 248 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 COX6B1P14854 86 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 ZNF43P17038 809 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 AHCYP23526 432 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 AQP2P41181 271 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 POU3F1Q03052 451 aaPredicted RBP17.26■□□□□ 0.35
CLN3-225ENST00000566824 CHRNB3Q05901 458 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 C1DQ13901 141 aaKnown RBP17.26■□□□□ 0.35
CLN3-225ENST00000566824 LAPTM4AQ15012 233 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 NIPAL3Q6P499 406 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 BEND4Q6ZU67 534 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 LINGO2Q7L985 606 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 NANOGNBQ7Z5D8 188 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 STK32CQ86UX6 486 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 SPATA24Q86W54 205 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 UEVLDQ8IX04 471 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 ZNF295-AS1Q8N0V1 137 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 OR4K5Q8NGD3 323 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 OR13C2Q8NGS9 318 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 LIPHQ8WWY8 451 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 SLCO4A1Q96BD0 722 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 FAM46AQ96IP4 442 aaKnown RBP17.26■□□□□ 0.35
CLN3-225ENST00000566824 GPA33Q99795 319 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 TRIM15Q9C019 465 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 ABCA12Q86UK0 2595 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 ITPR2Q14571 2701 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 FBN2P35556 2912 aa17.26■□□□□ 0.35
CLN3-225ENST00000566824 DHRS12A0PJE2 317 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 SH3PXD2BA1X283 911 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 CYSRT1A8MQ03 144 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 PRF1P14222 555 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 ZNF26P17031 533 aaPredicted RBP17.25■□□□□ 0.35
CLN3-225ENST00000566824 IGHV1-2P23083 117 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 LIMS1P48059 325 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 RPL18Q07020 188 aaKnown RBP17.25■□□□□ 0.35
CLN3-225ENST00000566824 ZP4Q12836 540 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 FAM98BQ52LJ0 330 aaKnown RBP17.25■□□□□ 0.35
CLN3-225ENST00000566824 FBXW9Q5XUX1 488 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 Q6ZT83 130 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 RNF113BQ8IZP6 322 aaKnown RBP17.25■□□□□ 0.35
CLN3-225ENST00000566824 UBE2J2Q8N2K1 259 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 LRRC46Q96FV0 321 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 WFIKKN1Q96NZ8 548 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 ZNF347Q96SE7 839 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 CHID1Q9BWS9 393 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 FANCFQ9NPI8 374 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 AURKCQ9UQB9 309 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 CACNA1DQ01668 2161 aa17.25■□□□□ 0.35
CLN3-225ENST00000566824 TRAV27A0A087WT01 109 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 C16orf97H3BN30 126 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 UPK3AO75631 287 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 LYZL6O75951 148 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 STAMBPO95630 424 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 HIST1H2ABP04908 130 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 F13BP05160 661 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 OMPP47874 163 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 SORDQ00796 357 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 FAPQ12884 760 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 CCNIQ14094 377 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 PHYHD1Q5SRE7 291 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 C9orf135Q5VTT2 229 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 HIST3H2AQ7L7L0 130 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 PXKQ7Z7A4 578 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 KIF18BQ86Y91 864 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 TMEM123Q8N131 208 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 OR4C15Q8NGM1 316 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 OR51A7Q8NH64 312 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 HIST1H2ACQ93077 130 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 MARVELD3Q96A59 401 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 ALPK1Q96QP1 1244 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 OR2M2Q96R28 347 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 TNFRSF13CQ96RJ3 184 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 PARPBPQ9NWS1 579 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 NOX1Q9Y5S8 564 aa17.24■□□□□ 0.35
CLN3-225ENST00000566824 LYVE1Q9Y5Y7 322 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms