RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 THRBP10828 461 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 PPP3CBP16298 524 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 TCN1P20061 433 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 CBLP22681 906 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 RBM34P42696 430 aaKnown RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 UGT2B15P54855 530 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 ZNF74Q16587 644 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 SFRP5Q5T4F7 317 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 FBXW9Q5XUX1 488 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 ANKRD34AQ69YU3 496 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 TMEM225Q6GV28 225 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 TTC33Q6PID6 262 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 C22orf34Q6ZV56 151 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 CREB3L2Q70SY1 520 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 FKBP9P1Q75LS8 142 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 H1FNTQ75WM6 255 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 TSEN54Q7Z6J9 526 aaKnown RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 NKAIN4Q8IVV8 208 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 OFCC1Q8IZS5 231 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 PQLC1Q8N2U9 271 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 KDM8Q8N371 416 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 C10orf53Q8N6V4 93 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 FAM86B1Q8N7N1 296 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 STEAP2Q8NFT2 490 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 KISS1RQ969F8 398 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 LURAP1Q96LR2 239 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MED18Q9BUE0 208 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 ASPNQ9BXN1 380 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 AMBRA1Q9C0C7 1298 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 ACTR6Q9GZN1 396 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 GORASP2Q9H8Y8 452 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MEPEQ9NQ76 525 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 C8orf4Q9NR00 106 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MAN2C1Q9NTJ4 1040 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 DCAF13Q9NV06 445 aaKnown RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 PARPBPQ9NWS1 579 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MRPL39Q9NYK5 338 aaKnown RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 NKX1-2Q9UD57 310 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 MALT1Q9UDY8 824 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 RPS6KA6Q9UK32 745 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 LOC102725191A0A1B0GVB3 256 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TCRBV3S1A0A5B6 114 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 DEFB108AA8MXU0 73 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 J3KTA2 159 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 PDLIM1O00151 329 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 FFAR1O14842 300 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 CASQ2O14958 399 aaPredicted RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 SIAH2O43255 324 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TRAF3IP2O43734 574 aaPredicted RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 PRSS23O95084 383 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 CH25HO95992 272 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 HPRP00739 348 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 IGF2P01344 180 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 HRGP04196 525 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 THBDP07204 575 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 ACADSP16219 412 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 FUT4P22083 530 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 CRYGSP22914 178 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 IGHV1-2P23083 117 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 IL32P24001 234 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 MSX2P35548 267 aaPredicted RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 YAP1P46937 504 aaKnown RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 HSPA13P48723 471 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 ITGADQ13349 1161 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TSC22D1Q15714 1073 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TSPO2Q5TGU0 170 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 BHLHA15Q7RTS1 189 aaPredicted RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 AAED1Q7RTV5 226 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 SLC46A3Q7Z3Q1 461 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TMEM200AQ86VY9 491 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 PFN4Q8NHR9 129 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TMEM255BQ8WV15 326 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 TMEM239Q8WW34 195 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 PYDC1Q8WXC3 89 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 S100PBPQ96BU1 408 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 OXGR1Q96P68 337 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 HDHD5Q9BXW7 423 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 FKRPQ9H9S5 495 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 RASSF1Q9NS23 344 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 SLC7A10Q9NS82 523 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 ARMC1Q9NVT9 282 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 SAMD4AQ9UPU9 718 aaKnown RBP8.26□□□□□ -1.09
LDLR-211ENST00000560173 RCE1Q9Y256 329 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 LRRC42Q9Y546 428 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 AP4S1Q9Y587 144 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 ENPP4Q9Y6X5 453 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 FBN3Q75N90 2809 aa8.26□□□□□ -1.09
LDLR-211ENST00000560173 CADP27708 2225 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 DHRS12A0PJE2 317 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 MS4A18H0YCH9 400 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 PLPP3O14495 311 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 CASKO14936 926 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 LYZL6O75951 148 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF432O94892 652 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 MT-ND1P03886 318 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 SEMG1P04279 462 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ITGA5P08648 1049 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF43P17038 809 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 IFNA8P32881 189 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 SELENOPP49908 381 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms