RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 AGAP20933 346 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 PTNP21246 168 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 SLC6A6P31641 620 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 RPL4P36578 427 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 DAP3P51398 398 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 PPP1R8Q12972 351 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 SLC17A1Q14916 467 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 RCN1Q15293 331 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 MS4A18Q3C1V0 323 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 ALG10Q5BKT4 473 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 ABLIM2Q6H8Q1 611 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 ZNF770Q6IQ21 691 aaPredicted RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 PGBD2Q6P3X8 592 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 XKRXQ6PP77 449 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 SMARCD3Q6STE5 483 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 RASSF6Q6ZTQ3 369 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 FAM214BQ7L5A3 538 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 GPAT4Q86UL3 456 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 CCDC103Q8IW40 242 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 CLDN22Q8N7P3 220 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 C9orf106Q8NAJ2 232 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 OR9K2Q8NGE7 335 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 OR6K3Q8NGY3 331 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 OR51A7Q8NH64 312 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 INTS12Q96CB8 462 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 ADAD1Q96M93 576 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 TNFRSF13CQ96RJ3 184 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 FEVQ99581 238 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 RBM4BQ9BQ04 359 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 RBM4Q9BWF3 364 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 GABARAPL1Q9H0R8 117 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 SEMA6AQ9H2E6 1030 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 VNN3Q9NY84 501 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 KLHL13Q9P2N7 655 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 BAIAP2Q9UQB8 552 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 POFUT2Q9Y2G5 429 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 NOSIPQ9Y314 301 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 HEATR1Q9H583 2144 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 A6NIZ1 184 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 NPIPB13A6NJU9 1138 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CENPBD1B2RD01 187 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 NPIPB4C9JG80 1138 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 MCIDASD6RGH6 385 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 LRRN3E7EW58 273 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 IDH3BO43837 385 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CD14P08571 375 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 TSPAN19P0C672 248 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 NR2C1P13056 603 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 POU2F1P14859 743 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CHRNB4P30926 498 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 UQCRC1P31930 480 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 AQP2P41181 271 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RPS6KA3P51812 740 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 IST1P53990 364 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RAD23AP54725 363 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CTXN1P60606 82 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RAP1BP61224 184 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RPS4XP62701 263 aaKnown RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 RAP1AP62834 184 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RPL18Q07020 188 aaKnown RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 RIPK1Q13546 671 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RFX4Q33E94 735 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 SLC25A35Q3KQZ1 300 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 FAM205BPQ63HN1 556 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 GPR139Q6DWJ6 353 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 HMBOX1Q6NT76 420 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 C3P1Q6ZMU1 363 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 DPY19L2P2Q6ZN68 376 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 ZBTB49Q6ZSB9 765 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CREB3L2Q70SY1 520 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 SLC35D2Q76EJ3 337 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 AAED1Q7RTV5 226 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 ABHD12BQ7Z5M8 362 aaPredicted RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 TMEM179BQ7Z7N9 219 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 TUSC5Q8IXB3 177 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 ZNF100Q8IYN0 542 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 LRRC17Q8N6Y2 441 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CNEP1R1Q8N9A8 125 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 OR9Q2Q8NGE9 314 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 OR13C2Q8NGS9 318 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 TEX47Q8TBZ9 253 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 FANK1Q8TC84 345 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 FNDC8Q8TC99 324 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 ABHD3Q8WU67 409 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 GTPBP3Q969Y2 492 aaKnown RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 EME1Q96AY2 570 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 TMEM45BQ96B21 275 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 VCXQ9H320 206 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 VCX3BQ9H321 246 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 B3GAT2Q9NPZ5 323 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 PAPOLBQ9NRJ5 636 aaKnown RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 TAS2R5Q9NYW4 299 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 PROCRQ9UNN8 238 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RCE1Q9Y256 329 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 SIGLEC7Q9Y286 467 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 RRP15Q9Y3B9 282 aaKnown RBP8.22□□□□□ -1.09
LDLR-210ENST00000559340 FLVCR1Q9Y5Y0 555 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 CDH10Q9Y6N8 788 aa8.22□□□□□ -1.09
LDLR-210ENST00000559340 TRAV27A0A087WT01 109 aa8.21□□□□□ -1.1
LDLR-210ENST00000559340 A0A0G2JNJ9 132 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms