RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 HOXD1Q9GZZ0 328 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 PIGMQ9H3S5 423 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 EVA1AQ9H8M9 152 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 POLE3Q9NRF9 147 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 MAN2C1Q9NTJ4 1040 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 FKBP14Q9NWM8 211 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF226Q9NYT6 803 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 ERVK-18Q9QC07 812 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF443Q9Y2A4 671 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-214ENST00000554604 CHST2Q9Y4C5 530 aa11.15□□□□□ -0.62
SHMT2-214ENST00000554604 A0A1W2PQD3 144 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 SH3D21A4FU49 640 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 AGAP5A6NIR3 686 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF99A8MXY4 864 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 H0YC42 278 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 GTPBP1O00178 669 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 EIF1AYO14602 144 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 NOL3O60936 208 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 CRHP06850 196 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 DBIP07108 87 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 POU2F1P14859 743 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF17P17021 662 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 RNF144AP50876 292 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 CLDN15P56746 228 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 SORDQ00796 357 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 EMX1Q04741 257 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ST3GAL3Q11203 375 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 GPR107Q5VW38 600 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 SLX4IPQ5VYV7 408 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 C1orf94Q6P1W5 598 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF614Q8N883 585 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF540Q8NDQ6 660 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 TOR1AIP2Q8NFQ8 470 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 B4GALNT2Q8NHY0 566 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 SLC38A4Q969I6 547 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 UBE2FQ969M7 185 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZBTB8AQ96BR9 441 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 POLDIP3Q9BY77 421 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 PRRG4Q9BZD6 226 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 POLR2J2Q9GZM3 115 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 QRSL1Q9H0R6 528 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 POLR2J3Q9H1A7 115 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 RASSF1Q9NS23 344 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 IMPAD1Q9NX62 359 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 DNAJB12Q9NXW2 375 aaKnown RBP11.14□□□□□ -0.63
SHMT2-214ENST00000554604 JKAMPQ9P055 326 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 PSORS1C1Q9UIG5 152 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF175Q9Y473 711 aa11.14□□□□□ -0.63
SHMT2-214ENST00000554604 NPIPA5A0A0B4J1W7 369 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 A0A1W2PNV4 684 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 NPIPA7E9PJI5 369 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 H3BMQ9 156 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 AP3D1O14617 1153 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 KIAA0513O60268 411 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 FCMRO60667 390 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 STX11O75558 287 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 CTAG2O75638 210 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 CYP7B1O75881 506 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 OR5F1O95221 314 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 NPIPA8P0DM63 369 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 FCGR2AP12318 317 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 GSTM3P21266 225 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 PCSK6P29122 969 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 IFNGR2P38484 337 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 EIF1AXP47813 144 aaKnown RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 IDH2P48735 452 aaKnown RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 RGS8P57771 180 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 TAS2R41P59536 307 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 SIRPAP78324 504 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 PIGFQ07326 219 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 TRAM2Q15035 370 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 PON3Q15166 354 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 CD226Q15762 336 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 SMN1Q16637 294 aaKnown RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 TMEM44Q2T9K0 475 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 PLPPR5Q32ZL2 321 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 SYT6Q5T7P8 510 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 C12orf73Q69YU5 71 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 ZNF836Q6ZNA1 936 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 HMGN2P46Q86SG4 172 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 GTPBP8Q8N3Z3 284 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 OR4K5Q8NGD3 323 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 FNDC9Q8TBE3 224 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 RAB2BQ8WUD1 216 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 RORBQ92753 470 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 MYDGFQ969H8 173 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 ZG16BQ96DA0 208 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 COG8Q96MW5 612 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 BCL7BQ9BQE9 202 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 CCDC90BQ9GZT6 254 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 CLEC4MQ9H2X3 399 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-214ENST00000554604 MED17Q9NVC6 651 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 GALNT8Q9NY28 637 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 AASSQ9UDR5 926 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 MKLN1Q9UL63 735 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 ITPR3Q14573 2671 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 HIVEP1P15822 2718 aa11.13□□□□□ -0.63
SHMT2-214ENST00000554604 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.12□□□□□ -0.63
SHMT2-214ENST00000554604 A6NNC1 897 aa11.12□□□□□ -0.63
SHMT2-214ENST00000554604 MSTNO14793 375 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms