RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 APOPT1Q96IL0 206 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 DENND2DQ9H6A0 471 aaPredicted RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 GPR35Q9HC97 309 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 ZNF275Q9NSD4 429 aaPredicted RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 MKS1Q9NXB0 559 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 FBXL3Q9UKT7 428 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 NUP214P35658 2090 aaPredicted RBP14.54□□□□□ -0.08
VPS29-204ENST00000548259 A0A1W2PPW3 197 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 ZNF99A8MXY4 864 aaPredicted RBP14.54□□□□□ -0.08
VPS29-204ENST00000548259 HPXP02790 462 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 FAM153BP0C7A2 387 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 CD79AP11912 226 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 RPS4Y1P22090 263 aaKnown RBP14.54□□□□□ -0.08
VPS29-204ENST00000548259 COL8A2P25067 703 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 ALDH3B1P43353 468 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 BNIP2Q12982 314 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 ANKFN1Q8N957 763 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 UBLCP1Q8WVY7 318 aaPredicted RBP14.54□□□□□ -0.08
VPS29-204ENST00000548259 SLC25A36Q96CQ1 311 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 C16orf45Q96MC5 204 aaPredicted RBP14.54□□□□□ -0.08
VPS29-204ENST00000548259 OXGR1Q96P68 337 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 SYT3Q9BQG1 590 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 TXLNGYQ9BZA5 131 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 B3GAT2Q9NPZ5 323 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 CALML5Q9NZT1 146 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 ZDHHC2Q9UIJ5 367 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 ZNF232Q9UNY5 417 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 PCDHGB1Q9Y5G3 927 aa14.54□□□□□ -0.08
VPS29-204ENST00000548259 CDHR4A6H8M9 788 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 MPZL1O95297 269 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 PNMTP11086 282 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 GATA3P23771 443 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 LMO4P61968 165 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 DEFA6Q01524 100 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 TEKQ02763 1124 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 LRRC74AQ0VAA2 488 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 CASP8Q14790 479 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 LARS2Q15031 903 aaKnown RBP14.53□□□□□ -0.08
VPS29-204ENST00000548259 GLIPR1L2Q4G1C9 344 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 CARM1Q86X55 608 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 SLC6A7Q99884 636 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 MECRQ9BV79 373 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 ZNF665Q9H7R5 613 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 RLIMQ9NVW2 624 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 DUSP13Q9UII6 198 aa14.53□□□□□ -0.08
VPS29-204ENST00000548259 PKD1L1Q8TDX9 2849 aa14.52□□□□□ -0.08
VPS29-204ENST00000548259 PRAMEF27A3QJZ7 478 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 OR2T1O43869 369 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 RAB36O95755 333 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 SHBGP04278 402 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 NUDT17P0C025 328 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 GKN3PP0CG01 181 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 S100A3P33764 101 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 NKPD1Q17RQ9 610 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 DCAF12L2Q5VW00 463 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 ATG16L1Q676U5 607 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 KDM8Q8N371 416 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 OR52P1PQ8NH57 321 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 PANX1Q96RD7 426 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 G6PC2Q9NQR9 355 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 BTNL2Q9UIR0 455 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 POFUT2Q9Y2G5 429 aa14.52□□□□□ -0.09
VPS29-204ENST00000548259 TGP01266 2768 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 TMEM247A6NEH6 219 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 CCDC154A6NI56 674 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 AIM2O14862 343 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 NPIPB7O75200 414 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 ENTPD5O75356 428 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 KRT75O95678 551 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 HLA-HP01893 362 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 ACAA2P42765 397 aaKnown RBP14.51□□□□□ -0.09
VPS29-204ENST00000548259 UBA52P62987 128 aaKnown RBP14.51□□□□□ -0.09
VPS29-204ENST00000548259 PCGF3Q3KNV8 242 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 TMEM154Q6P9G4 183 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 C5orf46Q6UWT4 87 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 LRRC34Q8IZ02 419 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 LRRC17Q8N6Y2 441 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 SNX33Q8WV41 574 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 YIPF5Q969M3 257 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 CCDC115Q96NT0 180 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 AKTIPQ9H8T0 292 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 P2RX2Q9UBL9 471 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 SLC7A8Q9UHI5 535 aa14.51□□□□□ -0.09
VPS29-204ENST00000548259 SLC22A23A1A5C7 686 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 E9PBE3 544 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 M0R3G1 203 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 WNT9BO14905 357 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 HKR1P10072 659 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 ZNF35P13682 527 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 RAD52P43351 418 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 RPS5P46782 204 aaKnown RBP14.5□□□□□ -0.09
VPS29-204ENST00000548259 PTDSS1P48651 473 aaKnown RBP14.5□□□□□ -0.09
VPS29-204ENST00000548259 SEC24CP53992 1094 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 CRISP3P54108 245 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 MAD2L1BPQ15013 274 aaPredicted RBP14.5□□□□□ -0.09
VPS29-204ENST00000548259 PDCD2Q16342 344 aaPredicted RBP14.5□□□□□ -0.09
VPS29-204ENST00000548259 SPANXN4Q5MJ08 99 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 RNF220Q5VTB9 566 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 TREML4Q6UXN2 200 aa14.5□□□□□ -0.09
VPS29-204ENST00000548259 ZNF813Q6ZN06 617 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms