RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 F3P13726 295 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 FPR3P25089 353 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 CD80P33681 288 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 RBMXP38159 391 aaKnown RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SLC9A3R2Q15599 337 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 FAM209BQ5JX69 171 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 MBOAT2Q6ZWT7 520 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 LRRC25Q8N386 305 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 ACOT4Q8N9L9 421 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 TEX19Q8NA77 164 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF511Q8NB15 262 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 CLCC1Q96S66 551 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 ULBP3Q9BZM4 244 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SMCO4Q9NRQ5 59 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 ZFP57Q9NU63 452 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 TAS2R5Q9NYW4 299 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 DVL2O14641 736 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SUSD5O60279 629 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 DPM1O60762 260 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 AHSA1O95433 338 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF20P17024 532 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 MELKQ14680 651 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PGAP1Q75T13 922 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 RASGRP3Q8IV61 690 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 HAVCR2Q8TDQ0 301 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 RNF141Q8WVD5 230 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PTP4A1Q93096 173 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 INPP5EQ9NRR6 644 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PCDHB10Q9UN67 800 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PUS1Q9Y606 427 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 GFYI3L273 518 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 FCMRO60667 390 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 HMGA1P17096 107 aaKnown RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 VASPP50552 380 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 NDUFA6P56556 154 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 AVL9Q8NBF6 648 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 NAXEQ8NCW5 288 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 OR4K17Q8NGC6 315 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 OR52H1Q8NGJ2 320 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 GPR148Q8TDV2 347 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 LURAP1Q96LR2 239 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PTCHD1Q96NR3 888 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 C2orf74A8MZ97 194 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 WASH3PC4AMC7 463 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SURF4O15260 269 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 PLGP00747 810 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 HOXB5P09067 269 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 NQO2P16083 231 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 CNR1P21554 472 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 EPHA4P54764 986 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 EBPQ15125 230 aaKnown RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM164Q5U3C3 297 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 CST9Q5W186 159 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 STPG2Q8N412 459 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 NMNAT3Q96T66 252 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 KLRF1Q9NZS2 232 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 LSM5Q9Y4Y9 91 aaKnown RBP13.15□□□□□ -0.3
LIMS1-215ENST00000544547 KLK3P07288 261 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 NMBP08949 121 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 TAS2R20P59543 309 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 CTXN1P60606 82 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 RAE1P78406 368 aaKnown RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 GLDNQ6ZMI3 551 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF620Q6ZNG0 422 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 LAS2Q8IYD9 372 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 C17orf47Q8NEP4 570 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 TCEAL2Q9H3H9 227 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 SLC2A4RGQ9NR83 387 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 CBLCQ9ULV8 474 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ARID2Q68CP9 1835 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ARRDC5A6NEK1 342 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF705GA8MUZ8 300 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 GPR89AB7ZAQ6 455 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 CSTAP01040 98 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 CHRM4P08173 479 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 GPR89BP0CG08 455 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 S100PP25815 95 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 TAS2R19P59542 299 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 C1orf61Q13536 156 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 PDE7AQ13946 482 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF425Q6IV72 752 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 DNM1P34Q6PK57 102 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 OR6N1Q8NGY5 312 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF296Q8WUU4 475 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 AMDHD1Q96NU7 426 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 OR2M4Q96R27 311 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 ATXN7L1Q9ULK2 861 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 SPI1P17947 270 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 S1PR1P21453 382 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 NTHL1P78549 312 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 PAPD4Q6PIY7 484 aaKnown RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 SEZ6L2Q6UXD5 910 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 GAREM2Q75VX8 874 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 TMPRSS9Q7Z410 1059 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 SLC16A11Q8NCK7 471 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 WNT2BQ93097 391 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 INTS14Q96SY0 518 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 NKX3-1Q99801 234 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-215ENST00000544547 GFOD1Q9NXC2 390 aa13.14□□□□□ -0.31
LIMS1-215ENST00000544547 A0A1W2PQU0 124 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms