RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SPATA2Q9UM82 520 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ZNF281Q9Y2X9 895 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 SPTBP11277 2137 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 K7ESF4 209 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NPIPB7O75200 414 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RAF1P04049 648 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 GIMD1P0DJR0 217 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 GP1BBP13224 206 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 MNDAP41218 407 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CXCL12P48061 93 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ARRB1P49407 418 aaPredicted RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 INPP1P49441 399 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 MMP15P51511 669 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 SLC26A5P58743 744 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CTXN1P60606 82 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TAGLNQ01995 201 aaKnown RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 ZNF117Q03924 483 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 SLC3A1Q07837 685 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RIPPLY1Q0D2K3 151 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 PLCXD2Q0VAA5 305 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 COL9A2Q14055 689 aaPredicted RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 SGCBQ16585 318 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 FDX2Q6P4F2 183 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 LEG1Q6P5S2 330 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CDC20BQ86Y33 519 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 LIX1LQ8IVB5 337 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 C9orf40Q8IXQ3 194 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 UBALD2Q8IYN6 164 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 DTX3Q8N9I9 347 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ZNF563Q8TA94 476 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NUBPLQ8TB37 319 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RNF138Q8WVD3 245 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 DEDD2Q8WXF8 326 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TSLPQ969D9 159 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NMNAT3Q96T66 252 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RERGLQ9H628 205 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 UCKL1Q9NWZ5 548 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 AKAP7Q9P0M2 348 aaPredicted RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 FKBP7Q9Y680 259 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TTLL8A6PVC2 850 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 OR2T1O43869 369 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ORC5O43913 435 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 FADS1O60427 444 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ICOSLGO75144 302 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 PTNP21246 168 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CXCR1P25024 350 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 EDNRAP25101 427 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 MST1P26927 711 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TACR3P29371 465 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CSF2RBP32927 897 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 KIR2DL3P43628 341 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 AP2S1P53680 142 aaPredicted RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 RAG2P55895 527 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CAV3P56539 151 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RPS11P62280 158 aaKnown RBP eCLIP8.97□□□□□ -0.97
SS18-205ENST00000542420 ERVK-25P63136 954 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 MRPS10P82664 201 aaKnown RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 CFHR1Q03591 330 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NDUFAF6Q330K2 333 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 EEF1A1P5Q5VTE0 462 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 FCRLBQ6BAA4 426 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 B3GLCTQ6Y288 498 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 SSX6Q7RTT6 188 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 GRINAQ7Z429 371 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NR2C2APQ86WQ0 139 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TIGD4Q8IY51 512 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 LRRC17Q8N6Y2 441 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 OR5H6Q8NGV6 325 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TRMT10AQ8TBZ6 339 aaKnown RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 ASB17Q8WXJ9 295 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TMEM234Q8WY98 164 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ST8SIA1Q92185 356 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 SLC7A6Q92536 515 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RFT1Q96AA3 541 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 OMA1Q96E52 524 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 KLHL15Q96M94 604 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 NEDD4LQ96PU5 975 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 ELF4Q99607 663 aaPredicted RBP8.97□□□□□ -0.97
SS18-205ENST00000542420 LPAR4Q99677 370 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 WACQ9BTA9 647 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 GRHPRQ9UBQ7 328 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 SUSD2Q9UGT4 822 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 FBXL4Q9UKA2 621 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 CAMK2AQ9UQM7 478 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 RASD1Q9Y272 281 aa8.97□□□□□ -0.97
SS18-205ENST00000542420 TRBV2A0A0J9YWF9 115 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TEX13CA0A0J9YWL9 993 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 ETV2O00321 342 aaPredicted RBP8.96□□□□□ -0.97
SS18-205ENST00000542420 OIP5O43482 229 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 SULT1B1O43704 296 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 EPXP11678 715 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 ALAS2P22557 587 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 IL32P24001 234 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 MAOBP27338 520 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 AQP2P41181 271 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 OR1D4P47884 311 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 PPM1FP49593 454 aaPredicted RBP8.96□□□□□ -0.97
SS18-205ENST00000542420 B2MP61769 119 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 RPL18Q07020 188 aaKnown RBP8.96□□□□□ -0.97
SS18-205ENST00000542420 NSDHLQ15738 373 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms