RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PRSS27Q9BQR3 290 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 JAM3Q9BX67 310 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 DEFB126Q9BYW3 111 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 LHPPQ9H008 270 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 ZNF700Q9H0M5 742 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 FGF20Q9NP95 211 aaPredicted RBP7.56□□□□□ -1.2
CHD4-208ENST00000540960 ATP13A2Q9NQ11 1180 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 PLA2G3Q9NZ20 509 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 ENPP5Q9UJA9 477 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 NPFFR2Q9Y5X5 522 aa7.56□□□□□ -1.2
CHD4-208ENST00000540960 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.56□□□□□ -1.22e-7■■■□□ 15.8
CHD4-208ENST00000540960 ARPC4-TTLL3A0A0A6YYG9 625 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 A0A0G2JK05 382 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 TMEM129A0AVI4 362 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 TRIM64BA6NI03 449 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 FAM90A27PA6NNH2 459 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 PRR23D1E9PI22 279 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 HRKO00198 91 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 ARPC3O15145 178 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SURF4O15260 269 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 HCRTR2O43614 444 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 ENTPD6O75354 484 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 GABARAPO95166 117 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 LYPD3O95274 346 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 RAF1P04049 648 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 PRR23D2P0DMB1 279 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 DBTP11182 482 aaKnown RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 PRG2P13727 222 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 HTR2AP28223 471 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 GPR4P46093 362 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 CLK1P49759 484 aaKnown RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 CCR4P51679 360 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 POLR2HP52434 150 aaKnown RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 CDH11P55287 796 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 EFNB1P98172 346 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SRSF2Q01130 221 aaKnown RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 PMP22Q01453 160 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SKP2Q13309 424 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 IRF3Q14653 427 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SSPNQ14714 243 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 DGUOKQ16854 277 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 TIGD6Q17RP2 521 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 FNDC7Q5VTL7 733 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 AGAP7PQ5VUJ5 663 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 FOXB2Q5VYV0 432 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 GPR139Q6DWJ6 353 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 Q6ZPB1 254 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 OLIG3Q7RTU3 272 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 GRINAQ7Z429 371 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 PPP1R32Q7Z5V6 425 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 CROCCP3Q8IVE0 287 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 C9orf40Q8IXQ3 194 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 PRSS58Q8IYP2 241 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 AMER2Q8N7J2 671 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 NFAM1Q8NET5 270 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 ANKK1Q8NFD2 765 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 B4GALNT2Q8NHY0 566 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 STK35Q8TDR2 534 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 EFHD2Q96C19 240 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 ZNF582Q96NG8 517 aaPredicted RBP7.55□□□□□ -1.2
CHD4-208ENST00000540960 AGAP4Q96P64 663 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 DMRTA2Q96SC8 542 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 IFT27Q9BW83 186 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 OR52D1Q9H346 318 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 UBQLN3Q9H347 655 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 FKRPQ9H9S5 495 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 MMP25Q9NPA2 562 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 CTPS2Q9NRF8 586 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 CMC2Q9NRP2 79 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SERINC1Q9NRX5 453 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 SLC22A11Q9NSA0 550 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 FBXO34Q9NWN3 711 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 CNIH4Q9P003 139 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 ZNF229Q9UJW7 825 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 ZNF281Q9Y2X9 895 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 A3GALT2U3KPV4 340 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 ARID1AO14497 2285 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 DYSFO75923 2080 aa7.55□□□□□ -1.2
CHD4-208ENST00000540960 TRAV36DV7A0A075B6V5 113 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 A0A087WZY1 265 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 NPIPA5A0A0B4J1W7 369 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 TRBV11-1A0A0K0K1C0 115 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 NPIPA7E9PJI5 369 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 H3BMQ9 156 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 CCRL2O00421 344 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 FADS1O60427 444 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 ICOSLGO75144 302 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 PTP4A3O75365 173 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 OR7A10O76100 309 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 NUDT14O95848 222 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 F10P00742 488 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 TP53P04637 393 aaPredicted RBP7.54□□□□□ -1.2
CHD4-208ENST00000540960 HTR1AP08908 422 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 NPIPA8P0DM63 369 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 CD53P19397 219 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 FUT1P19526 365 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 PSMA1P25786 263 aaKnown RBP7.54□□□□□ -1.2
CHD4-208ENST00000540960 ACVR2AP27037 513 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 EVI2BP34910 448 aa7.54□□□□□ -1.2
CHD4-208ENST00000540960 UGT2B10P36537 528 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms