RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ZDHHC1Q8WTX9 485 aa11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 DVL3Q92997 716 aaPredicted RBP11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 DNAJB12Q9NXW2 375 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 MYEF2Q9P2K5 600 aaKnown RBP11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 GPR160Q9UJ42 338 aa11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 MED31Q9Y3C7 131 aa11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 LRP4O75096 1905 aa11.5□□□□□ -0.57
SFSWAP-208ENST00000539506 SELENOFO60613 162 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 SC5DO75845 299 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 NKX2-2O95096 273 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 LIPCP11150 499 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 TYRP1P17643 537 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 PSMB1P20618 241 aaKnown RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 NNATQ16517 81 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 OR4D10Q8NGI6 311 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 OR4C6Q8NH72 309 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 RSC1A1Q92681 617 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 HOXB13Q92826 284 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 TSSK2Q96PF2 358 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ZNF426Q9BUY5 554 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 C12orf10Q9HB07 376 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 KRCC1Q9NPI7 259 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 TNFRSF10CO14798 259 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 KHNYNO15037 678 aaKnown RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 FOXS1O43638 330 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 PLPP2O43688 288 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 CDC123O75794 336 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 RCBTB2O95199 551 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 APEHP13798 732 aaKnown RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ST6GAL1P15907 406 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 GALP22466 123 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 AKR1D1P51857 326 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 LRRC37A5PQ49AS3 106 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 SLC6A19Q695T7 634 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 NDUFAF7Q7L592 441 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ZPLD1Q8TCW7 415 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 STK35Q8TDR2 534 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 PELI1Q96FA3 418 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 CDCA3Q99618 268 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 REG4Q9BYZ8 158 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 TMEM138Q9NPI0 162 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 PIPOXQ9P0Z9 390 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 C2orf74A8MZ97 194 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 KCNAB3O43448 404 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 NFYAP23511 347 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 CFL1P23528 166 aaKnown RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 MMP15P51511 669 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 LBX1P52954 281 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ERV3-1Q14264 604 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ATXN7L3Q14CW9 347 aaPredicted RBP11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 ADGRG3Q86Y34 549 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 FOXN4Q96NZ1 517 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 SLC35A3Q9Y2D2 325 aa11.49□□□□□ -0.57
SFSWAP-208ENST00000539506 WDR87Q6ZQQ6 2873 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 FAM86C2PA6NEL3 165 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 PDCD5O14737 125 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 DOK2O60496 412 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 MAS1P04201 325 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 ZNF10P21506 573 aaPredicted RBP11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 PTBP1P26599 531 aaKnown RBP eCLIP11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 C1orf61Q13536 156 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 DCAF12L2Q5VW00 463 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 FAM122CQ6P4D5 195 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 LRFN4Q6PJG9 635 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 PXKQ7Z7A4 578 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 LHFPL5Q8TAF8 219 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 GPBAR1Q8TDU6 330 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 LIN7BQ9HAP6 207 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 LHX6Q9UPM6 363 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 MOKQ9UQ07 419 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 AUP1Q9Y679 476 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 A0A0J9YY10 115 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 SLC22A31A6NKX4 558 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 H0YC42 278 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 TOR1AO14656 332 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 NMBP08949 121 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 ZNF35P13682 527 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 GBX2P52951 348 aaPredicted RBP11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 GUCA2AQ02747 115 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 STX4Q12846 297 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 ELP2Q6IA86 826 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 ZCCHC12Q6PEW1 402 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 C11orf88Q6PI97 169 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 NPSR1Q6W5P4 371 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 LINC00114Q6XXX2 140 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 PMM1Q92871 262 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 SPACA7Q96KW9 195 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 CHST6Q9GZX3 395 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 CLDN16Q9Y5I7 305 aa11.48□□□□□ -0.57
SFSWAP-208ENST00000539506 RIIAD1A6NNX1 92 aa11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 PYCARD-AS1I3L0S3 204 aa11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 IGHV4-34P06331 123 aa11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 HIST1H1CP16403 213 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 GABRG2P18507 467 aa11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 ACHEP22303 614 aa11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 RPL35P42766 123 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 MAT1AQ00266 395 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 ILF3Q12906 894 aaKnown RBP eCLIP11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 EIF2B5Q13144 721 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-208ENST00000539506 DMKNQ6E0U4 476 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms