RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 CD14P08571 375 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 ITPKBP27987 946 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 UQCRC1P31930 480 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 PITPNBP48739 271 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 ACTA2P62736 377 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 ACTG2P63267 376 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 SLC35D3Q5M8T2 416 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 LINC01590Q5TEZ4 76 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 POMZP3Q6PJE2 187 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 SLC29A4Q7RTT9 530 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 LIX1LQ8IVB5 337 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 SYS1Q8N2H4 156 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 SNX33Q8WV41 574 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 TRIM63Q969Q1 353 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 RFT1Q96AA3 541 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 CREB3L1Q96BA8 519 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 THAP7Q9BT49 309 aaPredicted RBP12.16□□□□□ -0.46
VPS33B-202ENST00000535906 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.16□□□□□ -0.46
VPS33B-202ENST00000535906 HDHD2Q9H0R4 259 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 PLSCR3Q9NRY6 295 aa12.16□□□□□ -0.46
VPS33B-202ENST00000535906 ALG1L2C9J202 215 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 SLC6A1P30531 599 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 DHPSP49366 369 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 SIRPAP78324 504 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 RPL18Q07020 188 aaKnown RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 CDK5R1Q15078 307 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 YOD1Q5VVQ6 348 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 TMEM71Q6P5X7 295 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 YIPF7Q8N8F6 280 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 ZNF441Q8N8Z8 693 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 LSM14AQ8ND56 463 aaKnown RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 LILRB4Q8NHJ6 448 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 TRMT10AQ8TBZ6 339 aaKnown RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 ALG12Q9BV10 488 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 SLA2Q9H6Q3 261 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 FSCN3Q9NQT6 498 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 ACOXLQ9NUZ1 547 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 NCDNQ9UBB6 729 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 GNG8Q9UK08 70 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 COLQQ9Y215 455 aaPredicted RBP12.15□□□□□ -0.46
VPS33B-202ENST00000535906 NPFFR2Q9Y5X5 522 aa12.15□□□□□ -0.46
VPS33B-202ENST00000535906 A0A1W2PPK0 400 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 CPED1A4D0V7 1026 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 OR6C70A6NIJ9 312 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 LANCL1O43813 399 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 SCO2O43819 266 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 GLCEO94923 617 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 NUDT14O95848 222 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 SERPINA3P01011 423 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 ARSBP15848 533 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 GRPRP30550 384 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 SDHAP31040 664 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 SLC6A8P48029 635 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 GPR176Q14439 515 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 C1QL3Q5VWW1 255 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 RHBDD2Q6NTF9 364 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 GUSBP11Q6P575 273 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 ZNF511Q8NB15 262 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 PLPP5Q8NEB5 264 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 STT3BQ8TCJ2 826 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 THAP4Q8WY91 577 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 SMIM19Q96E16 107 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 TBL1XR1Q9BZK7 514 aa12.15□□□□□ -0.47
VPS33B-202ENST00000535906 TRAV1-2A0A0B4J238 106 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 A0A1W2PQD3 144 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 INMT-MINDY4F8WBC2 141 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 PSMD9O00233 223 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 DCTN6O00399 190 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 TIAF1O95411 115 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 PAHP00439 452 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 TFPIP10646 304 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 RAB3BP20337 219 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 ERP29P30040 261 aaKnown RBP12.14□□□□□ -0.47
VPS33B-202ENST00000535906 LCN1P31025 176 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 GDI2P50395 445 aaKnown RBP12.14□□□□□ -0.47
VPS33B-202ENST00000535906 AGFG1P52594 562 aaKnown RBP12.14□□□□□ -0.47
VPS33B-202ENST00000535906 GBX2P52951 348 aaPredicted RBP12.14□□□□□ -0.47
VPS33B-202ENST00000535906 PNLIPRP2P54317 469 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 IL10RAQ13651 578 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 SLC25A35Q3KQZ1 300 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 PYHIN1Q6K0P9 492 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 C16orf47Q6ZP98 133 aaPredicted RBP12.14□□□□□ -0.47
VPS33B-202ENST00000535906 JAZF1Q86VZ6 243 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 SLC7A5P2Q9GIP4 190 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 C12orf10Q9HB07 376 aa12.14□□□□□ -0.47
VPS33B-202ENST00000535906 LY6G6EA0A0G2JKS1 128 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 A6NL46 340 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 PRR32B1ATL7 298 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 CENPBD1B2RD01 187 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 IDSB3KWA1 339 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 H7C1C5 153 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 FZD7O75084 574 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 APEHP13798 732 aaKnown RBP12.13□□□□□ -0.47
VPS33B-202ENST00000535906 CXCR1P25024 350 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 EPHA8P29322 1005 aaPredicted RBP12.13□□□□□ -0.47
VPS33B-202ENST00000535906 PSMB10P40306 273 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 RRAS2P62070 204 aaPredicted RBP12.13□□□□□ -0.47
VPS33B-202ENST00000535906 RPS11P62280 158 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS33B-202ENST00000535906 LCN6P62502 163 aa12.13□□□□□ -0.47
VPS33B-202ENST00000535906 FAPQ12884 760 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms