RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 WFDC5Q8TCV5 224 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 AGR3Q8TD06 166 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 RLN3Q8WXF3 142 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 STMN2Q93045 179 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TMIGD2Q96BF3 282 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TAMM41Q96BW9 452 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 C12orf43Q96C57 262 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 ISOC1Q96CN7 298 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 OTUB2Q96DC9 234 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 FAM122AQ96E09 287 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TMEM80Q96HE8 168 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 RNF170Q96K19 258 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 HSFY1Q96LI6 401 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZNF597Q96LX8 424 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZNF578Q96N58 590 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 CPXM1Q96SM3 734 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 OVOL2Q9BRP0 275 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZSCAN5AQ9BUG6 496 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 LRRC61Q9BV99 259 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CALN1Q9BXU9 219 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 NMNAT2Q9BZQ4 307 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PKIBQ9C010 78 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 Q9H521 79 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TMEM231Q9H6L2 316 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 MTHFD2LQ9H903 347 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 COG4Q9H9E3 785 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 NANOGQ9H9S0 305 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UCK1Q9HA47 277 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A7Q9HAW7 530 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A10Q9HAW8 530 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A8Q9HAW9 530 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CRLF2Q9HC73 371 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UBE2TQ9NPD8 197 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 C12orf4Q9NQ89 552 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SPHK2Q9NRA0 654 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 FBXO8Q9NRD0 319 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PKD2L2Q9NZM6 624 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 EIF3KQ9UBQ5 218 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 ENPP5Q9UJA9 477 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 STOML2Q9UJZ1 356 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 NOCTQ9UK39 431 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 RNF150Q9ULK6 438 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CLEC4EQ9ULY5 219 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CHTOPQ9Y3Y2 248 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 MFHAS1Q9Y4C4 1052 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CSAG2Q9Y5P2 127 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CACNG2Q9Y698 323 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 AP4B1Q9Y6B7 739 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 R4GN57 208 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 KNTC1P50748 2209 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 MAP1BP46821 2468 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 LOC105371242A0A075B767 164 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 A0A087X0T9 212 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 ISPDA4D126 451 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 ZNF487B1APH4 448 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 C10orf142B7Z368 130 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 H3BMM5 538 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 H3BMQ9 156 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 SLC28A1O00337 649 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CASC3O15234 703 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 TLX2O43763 284 aaPredicted RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 GPRIN2O60269 458 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 NME6O75414 186 aaPredicted RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 OR5F1O95221 314 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 ACSL3O95573 720 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 ECDO95905 644 aaPredicted RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 MOCS2O96007 188 aaPredicted RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 IGHEP01854 428 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 RPS17P08708 135 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 TRAPPC2P0DI81 140 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 TRAPPC2BP0DI82 140 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 PRKAR1AP10644 381 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 UCHL3P15374 230 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 PRKACAP17612 351 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 RPL35AP18077 110 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 LBPP18428 481 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 IMPDH1P20839 514 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 PSMB4P28070 264 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 RRM2P31350 389 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 HSD17B2P37059 387 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 HPCAL1P37235 193 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 NSFP46459 744 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 OR3A3P47888 321 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 OR3A2P47893 321 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CDX1P47902 265 aaPredicted RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 CXCL12P48061 93 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 PSMD8P48556 350 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CNN1P51911 297 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 TMBIM6P55061 237 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 MTCP1P56278 107 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 AP1S2P56377 157 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CDKL1Q00532 357 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CAV1Q03135 178 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 HSF2Q03933 536 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 CSTF1Q05048 431 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 KDSRQ06136 332 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 RIPPLY1Q0D2K3 151 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 SRSF5Q13243 272 aaKnown RBP2.85□□□□□ -1.95
USP48-215ENST00000534705 CDH18Q13634 790 aa2.85□□□□□ -1.95
USP48-215ENST00000534705 ENPP2Q13822 863 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms