RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RTP3Q9BQQ7 232 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 MS4A7Q9GZW8 240 aaPredicted RBP5.03□□□□□ -1.6
CD44-236ENST00000533222 RAB1BQ9H0U4 201 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 CDT1Q9H211 546 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 BOLA2Q9H3K6 86 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 ZNF385DQ9H6B1 395 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 EML4Q9HC35 981 aaKnown RBP5.03□□□□□ -1.6
CD44-236ENST00000533222 TMEM45AQ9NWC5 275 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 SLCO1C1Q9NYB5 712 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 ZNF282Q9UDV7 671 aaPredicted RBP5.03□□□□□ -1.6
CD44-236ENST00000533222 ZDHHC2Q9UIJ5 367 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 V9GYH0 126 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 RBBP6Q7Z6E9 1792 aaKnown RBP5.03□□□□□ -1.6
CD44-236ENST00000533222 FLT4P35916 1363 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 CCDC88AQ3V6T2 1871 aa5.03□□□□□ -1.6
CD44-236ENST00000533222 A0A087WWL8 130 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 PRAMEF33A0A0G2JMD5 474 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 A0A1W2PP18 115 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 A0A1W2PQ09 198 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 A0A1W2PS29 197 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 BBIP1A8MTZ0 92 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 INMT-MINDY4F8WBC2 141 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 F8WDY8 70 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC1A7O00341 560 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SOCS6O14544 535 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 OR2T1O43869 369 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 HBP1O60381 514 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 PRAMEF10O60809 474 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 B4GALT2O60909 372 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 FZD7O75084 574 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 ENTPD3O75355 529 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 NDUFS3O75489 264 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 AP2A2O94973 939 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 AKR7A3O95154 331 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 PDGFBP01127 241 aaPredicted RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 ERCC1P07992 297 aaPredicted RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 ALDOCP09972 364 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 ELFN1P0C7U0 828 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 UBBP0CG47 229 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 UBCP0CG48 685 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 CPN1P15169 458 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 VEGFAP15692 232 aaPredicted RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 RPA2P15927 270 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 GATA3P23771 443 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 PTPN3P26045 913 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 TNFSF8P32971 234 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CD80P33681 288 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CXCR3P49682 368 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CLCN3P51790 818 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CDKN2DP55273 166 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 OR10A3P58181 314 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 RPS16P62249 146 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 RANP62826 216 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 RPS27AP62979 156 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 UBA52P62987 128 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 RBPJQ06330 500 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 TCP10Q12799 353 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 OVGP1Q12889 678 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 UBE2V1Q13404 147 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SNTB2Q13425 540 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 KEAP1Q14145 624 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CSHL1Q14406 222 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 RSU1Q15404 277 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SIX1Q15475 284 aaPredicted RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 VAMP3Q15836 100 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 ZBTB6Q15916 424 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 RPE65Q16518 533 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 MEP1AQ16819 746 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 CTXN3Q4LDR2 81 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 MORN2Q502X0 79 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 COL5A1-AS1Q5SY13 56 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 AKR1C8PQ5T2L2 129 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 KHDRBS2Q5VWX1 349 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 PLCXD3Q63HM9 321 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC22A10Q63ZE4 541 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 NSUN5P2Q63ZY6 315 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SAXO2Q658L1 398 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 GLYATQ6IB77 296 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 ZNF774Q6NX45 483 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 DNM1P34Q6PK57 102 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC22A25Q6T423 547 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 EPGNQ6UW88 154 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SCIMPQ6UWF3 145 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 GSG1LQ6UXU4 331 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 IL34Q6ZMJ4 242 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 RNF165Q6ZSG1 346 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 TMEM179Q6ZVK1 233 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 HIST2H3AQ71DI3 136 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC29A4Q7RTT9 530 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 MRPL21Q7Z2W9 205 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 KCNMB4Q86W47 210 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC26A11Q86WA9 606 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 RBM45Q8IUH3 476 aaKnown RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 H1FOOQ8IZA3 346 aaPredicted RBP5.02□□□□□ -1.61
CD44-236ENST00000533222 OFCC1Q8IZS5 231 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SLC34A3Q8N130 599 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 LCORLQ8N3X6 602 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 SPICQ8N5J4 248 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 ZNF555Q8NEP9 628 aa5.02□□□□□ -1.61
CD44-236ENST00000533222 OR56B1Q8NGI3 324 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms