RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DCAF13Q9NV06 445 aaKnown RBP13.27□□□□□ -0.29
CPSF1-208ENST00000532560 TAS2R16Q9NYV7 291 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF229Q9UJW7 825 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 A4GNTQ9UNA3 340 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 MYO9AB2RTY4 2548 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 OR6C65A6NJZ3 312 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 LRRN3E7EW58 273 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 KPNA4O00629 521 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-208ENST00000532560 TRAF3IP2O43734 574 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-208ENST00000532560 TCN1P20061 433 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-208ENST00000532560 IFNA8P32881 189 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 PUDPQ08623 228 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 ST3GAL3Q11203 375 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 FAPQ12884 760 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 PMS2P3Q13401 168 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 TSC22D1Q15714 1073 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 TSPO2Q5TGU0 170 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 C1orf146Q5VVC0 180 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 PGM2L1Q6PCE3 622 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 FKBP9P1Q75LS8 142 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 SSX8Q7RTT4 187 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 CDC20BQ86Y33 519 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 NKAIN4Q8IVV8 208 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 KDM8Q8N371 416 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 POMGNT2Q8NAT1 580 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 FAM156AQ8NDB6 213 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 OR5J2Q8NH18 312 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 TMEM255BQ8WV15 326 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 HSD17B8Q92506 261 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 HS6ST2Q96MM7 605 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 MEPEQ9NQ76 525 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-208ENST00000532560 SLC7A10Q9NS82 523 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 UPB1Q9UBR1 384 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 SLC7A8Q9UHI5 535 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 SAMD4AQ9UPU9 718 aaKnown RBP13.26□□□□□ -0.29
CPSF1-208ENST00000532560 SNX13Q9Y5W8 968 aa13.26□□□□□ -0.29
CPSF1-208ENST00000532560 ENO4A6NNW6 628 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 MS4A18H0YCH9 400 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 PLPP3O14495 311 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 AKAP8O43823 692 aaKnown RBP13.25□□□□□ -0.29
CPSF1-208ENST00000532560 KRT36O76013 467 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF432O94892 652 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 CH25HO95992 272 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 HPRP00739 348 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 MT-ND1P03886 318 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 ITGA5P08648 1049 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 LOXP28300 417 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-208ENST00000532560 SELENOPP49908 381 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 UGT2B15P54855 530 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 CLDN17P56750 224 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 C1DQ13901 141 aaKnown RBP13.25□□□□□ -0.29
CPSF1-208ENST00000532560 TAB1Q15750 504 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 MS4A18Q3C1V0 323 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 BEX5Q5H9J7 111 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 SLC46A3Q7Z3Q1 461 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 ABHD12BQ7Z5M8 362 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-208ENST00000532560 CDH24Q86UP0 819 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 P2RY8Q86VZ1 359 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 UEVLDQ8IX04 471 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 C1orf162Q8NEQ5 155 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-208ENST00000532560 TMEM239Q8WW34 195 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 LINC00470Q9BZP3 86 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 NANSQ9NR45 359 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 NOX1Q9Y5S8 564 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 ENPP4Q9Y6X5 453 aa13.25□□□□□ -0.29
CPSF1-208ENST00000532560 ABCA4P78363 2273 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 OR5H1A6NKK0 313 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 FFAR1O14842 300 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 ARPC2O15144 300 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 KLF4O43474 513 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 RAD51DO75771 328 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 PRSS23O95084 383 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 ASAH2BP0C7U1 165 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 ANPEPP15144 967 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 MPGP29372 298 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 DNAJA1P31689 397 aaKnown RBP13.24□□□□□ -0.29
CPSF1-208ENST00000532560 FOXG1P55316 489 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-208ENST00000532560 IL1RL1Q01638 556 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 POU3F1Q03052 451 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-208ENST00000532560 TIMM23BQ5SRD1 257 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 OR7E24Q6IFN5 339 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 NIPAL3Q6P499 406 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 SEZ6L2Q6UXD5 910 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 PXKQ7Z7A4 578 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 WFDC8Q8IUA0 241 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 PFN4Q8NHR9 129 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 ALKBH3Q96Q83 286 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF184Q99676 751 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-208ENST00000532560 FNDC11Q9BVV2 318 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 VCXQ9H320 206 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 MAN2C1Q9NTJ4 1040 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 MED31Q9Y3C7 131 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 LRBAP50851 2863 aa13.24□□□□□ -0.29
CPSF1-208ENST00000532560 PDZD2O15018 2839 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-208ENST00000532560 A0A1W2PPR1 153 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 CIB4A0PJX0 185 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 HTR3EA5X5Y0 456 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF587BE7ETH6 402 aa13.23□□□□□ -0.29
CPSF1-208ENST00000532560 J3KTA2 159 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms