RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SNX13Q9Y5W8 968 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 CAPN7Q9Y6W3 813 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 CIB4A0PJX0 185 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 BBIP1A8MTZ0 92 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 FAM220BPB1ANY3 271 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 AIM2O14862 343 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 SLC22A2O15244 555 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 ATP8B1O43520 1251 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 CHP2O43745 196 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 NPPAP01160 153 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 COX4I1P13073 169 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 HOXB4P17483 251 aaPredicted RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 CDH2P19022 906 aaPredicted RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 OR1E2P47887 323 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 UGT2B15P54855 530 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 KRTAP1-1Q07627 177 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 VEZF1Q14119 521 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 ZNF74Q16587 644 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 MST1LQ2TV78 715 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 TBRG1Q3YBR2 411 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 SWT1Q5T5J6 900 aaKnown RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 SHEQ5VZ18 495 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 PRSS57Q6UWY2 283 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 YTHDF3Q7Z739 585 aaKnown RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 CARM1Q86X55 608 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 C20orf196Q8IYI0 205 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 POMGNT2Q8NAT1 580 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 BHLHE22Q8NFJ8 381 aaPredicted RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 SMAP2Q8WU79 429 aaPredicted RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 MUCL1Q96DR8 90 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 COX4I2Q96KJ9 171 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 Q96MF0 132 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 ZNF75AQ96N20 296 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 GPR35Q9HC97 309 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 C20orf141Q9NUB4 165 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 MED29Q9NX70 200 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 MRPL39Q9NYK5 338 aaKnown RBP9.3□□□□□ -0.92
CD44-227ENST00000528086 ZNF224Q9NZL3 707 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 UPB1Q9UBR1 384 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 SLC7A7Q9UM01 511 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 RCE1Q9Y256 329 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 ABCA1O95477 2261 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 ABCA2Q9BZC7 2435 aa9.3□□□□□ -0.92
CD44-227ENST00000528086 A0A096LPE4 126 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 IGHV1-18A0A0C4DH31 117 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 A0A1W2PPZ6 126 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 SLC35F4A4IF30 521 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 TRAPPC13A5PLN9 417 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 M0R1B8 84 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 FFAR1O14842 300 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 OR2T1O43869 369 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 SEC14L2O76054 403 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 IGLV1-44P01699 117 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 IGHV4-39P01824 125 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 CELA3BP08861 270 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 TSPAN19P0C672 248 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 ASAH2BP0C7U1 165 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 ZNF43P17038 809 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 KDELR2P33947 212 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 CDKN1AP38936 164 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 ARF1P84077 181 aaKnown RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 ROR2Q01974 943 aaKnown RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 RUNX1T1Q06455 604 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 PIN1Q13526 163 aaPredicted RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 FHL1Q13642 323 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 CYBRD1Q53TN4 286 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 OR7E24Q6IFN5 339 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 C5orf46Q6UWT4 87 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 VTCN1Q7Z7D3 282 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 RANBP3LQ86VV4 465 aaPredicted RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 SLC30A8Q8IWU4 369 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 MICU2Q8IYU8 434 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 C17orf78Q8N4C9 275 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 SCAIQ8N9R8 606 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 PFN4Q8NHR9 129 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 FBXW5Q969U6 566 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 ELAC2Q9BQ52 826 aaKnown RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 ECSITQ9BQ95 431 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 EVA1AQ9H8M9 152 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 CACYBPQ9HB71 228 aaKnown RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 MAN2C1Q9NTJ4 1040 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 CISD1Q9NZ45 108 aaKnown RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 CRNNQ9UBG3 495 aaPredicted RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 GDF2Q9UK05 429 aaPredicted RBP9.29□□□□□ -0.92
CD44-227ENST00000528086 A4GNTQ9UNA3 340 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 EDARQ9UNE0 448 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 SH3GLB1Q9Y371 365 aa9.29□□□□□ -0.92
CD44-227ENST00000528086 ARPC4-TTLL3A0A0A6YYG9 625 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 ATP6V1G2-DDX39BF2Z307 99 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 H7C1Q1 480 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 KPNA4O00629 521 aaPredicted RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 PIP5K1CO60331 668 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 SNX3O60493 162 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 PRSS23O95084 383 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 CH25HO95992 272 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 IGFBP1P08833 259 aaPredicted RBP9.28□□□□□ -0.92
CD44-227ENST00000528086 FOSL1P15407 271 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 FUT1P19526 365 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 CALCRP30988 508 aa9.28□□□□□ -0.92
CD44-227ENST00000528086 GSK3BP49841 420 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms