RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 OR2T29Q8NH02 315 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 C16orf52Q8NHV5 167 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 BBS10Q8TAM1 723 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GPR151Q8TDV0 419 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 GEMIN6Q8WXD5 167 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 PROX1Q92786 737 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CTHRC1Q96CG8 243 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ZG16BQ96DA0 208 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ARSGQ96EG1 525 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TRMT61AQ96FX7 289 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 RMND5BQ96G75 393 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 OR14A2Q96R54 314 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 OR1F2PQ96R84 312 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ZNF607Q96SK3 696 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SDF2Q99470 211 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 PIP5K1AQ99755 562 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 AIFM2Q9BRQ8 373 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 DOHHQ9BU89 302 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 BDH2Q9BUT1 245 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 C9orf16Q9BUW7 83 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TEX12Q9BXU0 123 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 OR8D2Q9GZM6 311 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 VN1R1Q9GZP7 353 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 CTDSP1Q9GZU7 261 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MEGF9Q9H1U4 602 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SLC38A1Q9H2H9 487 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 AKIRIN1Q9H9L7 192 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 SPACA1Q9HBV2 294 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 IL1RAPQ9NPH3 570 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MKKSQ9NPJ1 570 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 SEMA4GQ9NTN9 838 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 NUDT15Q9NV35 164 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 EXD2Q9NVH0 621 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 THUMPD1Q9NXG2 353 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 GIN1Q9NXP7 522 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ALKBH4Q9NXW9 302 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 RHCGQ9UBD6 479 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SEC14L3Q9UDX4 400 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ZNF639Q9UID6 485 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 KCNE5Q9UJ90 142 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MKLN1Q9UL63 735 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 NTNG1Q9Y2I2 539 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SH3GLB1Q9Y371 365 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 SAMHD1Q9Y3Z3 626 aaKnown RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 CHST2Q9Y4C5 530 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 TESMINQ9Y4I5 508 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 MMACHCQ9Y4U1 282 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 LRRC42Q9Y546 428 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 HEMK1Q9Y5R4 338 aaPredicted RBP3.8□□□□□ -1.8
CD44-226ENST00000527889 AP4B1Q9Y6B7 739 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 COL6A6A6NMZ7 2263 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ICE1Q9Y2F5 2266 aa3.8□□□□□ -1.8
CD44-226ENST00000527889 ABCA2Q9BZC7 2435 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 IGKV3D-11A0A0A0MRZ8 115 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 LIPT2A6NK58 231 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 DUXAA6NLW8 204 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 CLDN24A6NM45 220 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 A8MV72 311 aaPredicted RBP3.79□□□□□ -1.8
CD44-226ENST00000527889 IDSB3KWA1 339 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 DIRC3C9JPN6 131 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 DLGAP1O14490 977 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 POLR1CO15160 346 aaPredicted RBP3.79□□□□□ -1.8
CD44-226ENST00000527889 TO15178 435 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 SPRY2O43597 315 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 FCMRO60667 390 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 PRAMEF2O60811 474 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 MITFO75030 526 aaPredicted RBP3.79□□□□□ -1.8
CD44-226ENST00000527889 CSO75390 466 aaKnown RBP3.79□□□□□ -1.8
CD44-226ENST00000527889 SERPINB7O75635 380 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 KCNK2O95069 426 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 NKX2-2O95096 273 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 NTN1O95631 604 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 DDAH2O95865 285 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 EPPINO95925 133 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 IFNA14P01570 189 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 IL1AP01583 271 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 IGKV1D-16P01601 117 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 OPN1LWP04000 364 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 IFNW1P05000 195 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 TPOP07202 933 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 HBQ1P09105 142 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 PABPC4LP0CB38 370 aaKnown RBP3.79□□□□□ -1.8
CD44-226ENST00000527889 STAG3L3P0CL85 134 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 CDK4P11802 303 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 FGF5P12034 268 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 POU2F1P14859 743 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 UQCRBP14927 111 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 ETS2P15036 469 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 GATA3P23771 443 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 GCH1P30793 250 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 RRM2P31350 389 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 CCKBRP32239 447 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 RORAP35398 523 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 MAP3K8P41279 467 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 CAPZA2P47755 286 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 BMXP51813 675 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 PPP5CP53041 499 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 CDH12P55289 794 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 RAB14P61106 215 aa3.79□□□□□ -1.8
CD44-226ENST00000527889 TSPAN5P62079 268 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms