RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KDM8Q8N371 416 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 GPR137CQ8N3F9 429 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 C10orf53Q8N6V4 93 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 OR2T12Q8NG77 320 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 OR1K1Q8NGR3 316 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 RCN3Q96D15 328 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 BDH2Q9BUT1 245 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 ALG2Q9H553 416 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 FKRPQ9H9S5 495 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 ARMCX1Q9P291 453 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 SEC14L4Q9UDX3 406 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 PRR14LQ5THK1 2151 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 ARPC4-TTLL3A0A0A6YYG9 625 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 M0R1B8 84 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 OVOL3O00110 214 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 NDUFAB1O14561 156 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 UBE2NP61088 152 aaKnown RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 ROR2Q01974 943 aaKnown RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 TBRG1Q3YBR2 411 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 ANKRD16Q6P6B7 361 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 SLC22A25Q6T423 547 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 SPATA21Q7Z572 469 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 PXKQ7Z7A4 578 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 BIVMQ86UB2 503 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 DTX2Q86UW9 622 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 PIAS4Q8N2W9 510 aaPredicted RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 OR4D11Q8NGI4 311 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 OR5J2Q8NH18 312 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 GTPBP3Q969Y2 492 aaKnown RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 HOPXQ9BPY8 73 aaPredicted RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 ZNF426Q9BUY5 554 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 NSRP1Q9H0G5 558 aaKnown RBP18.06■□□□□ 0.48
VPS28-206ENST00000526734 POU2F3Q9UKI9 436 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 SLC7A7Q9UM01 511 aa18.06■□□□□ 0.48
VPS28-206ENST00000526734 A0A1W2PR80 420 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 ELOVL7A1L3X0 281 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 FAM171A2A8MVW0 826 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 MS4A18H0YCH9 400 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 UPK3AO75631 287 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 COX4I1P13073 169 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 CDH2P19022 906 aaPredicted RBP18.05■□□□□ 0.48
VPS28-206ENST00000526734 ATP5J2P56134 94 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 LTBQ06643 244 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 MS4A18Q3C1V0 323 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 C3orf36Q3SXR2 165 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 AGAP6Q5VW22 663 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 CARM1Q86X55 608 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 RBM45Q8IUH3 476 aaKnown RBP18.05■□□□□ 0.48
VPS28-206ENST00000526734 CCDC36Q8IYA8 594 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 MICU2Q8IYU8 434 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 TMEM123Q8N131 208 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 NEUROG1Q92886 237 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 LRR1Q96L50 414 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 MOGAT1Q96PD6 335 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 OR2M2Q96R28 347 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 B3GAT2Q9NPZ5 323 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 SH3GLB1Q9Y371 365 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 MTORP42345 2549 aa18.05■□□□□ 0.48
VPS28-206ENST00000526734 PLPP3O14495 311 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 OR5F1O95221 314 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 OR6A2O95222 327 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 LYPD3O95274 346 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 IGF2P01344 180 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 SOD3P08294 240 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 THRBP10828 461 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 CBLP22681 906 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 KDELR2P33947 212 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 RBM34P42696 430 aaKnown RBP18.04■□□□□ 0.48
VPS28-206ENST00000526734 SLC25A3Q00325 362 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 POU3F1Q03052 451 aaPredicted RBP18.04■□□□□ 0.48
VPS28-206ENST00000526734 ZNF74Q16587 644 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 PGGHGQ32M88 737 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 HIKESHIQ53FT3 197 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 ZNF544Q6NX49 715 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 HACD2Q6Y1H2 254 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 POU5F2Q8N7G0 328 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 FAM169BQ8N8A8 192 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 LZICQ8WZA0 190 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 BCL2L2Q92843 193 aaPredicted RBP18.04■□□□□ 0.48
VPS28-206ENST00000526734 Q96MF0 132 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 DHRS9Q9BPW9 319 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 TRAF4Q9BUZ4 470 aaPredicted RBP18.04■□□□□ 0.48
VPS28-206ENST00000526734 EFCAB1Q9HAE3 211 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 ZNF229Q9UJW7 825 aa18.04■□□□□ 0.48
VPS28-206ENST00000526734 THY1P04216 161 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 IFNA8P32881 189 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 ZP4Q12836 540 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 LRRC23Q53EV4 343 aaPredicted RBP18.03■□□□□ 0.48
VPS28-206ENST00000526734 CYBRD1Q53TN4 286 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 WDR88Q6ZMY6 472 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 LINGO2Q7L985 606 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 CMTM5Q96DZ9 223 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 ADAD1Q96M93 576 aaKnown RBP18.03■□□□□ 0.48
VPS28-206ENST00000526734 BARX1Q9HBU1 254 aaPredicted RBP18.03■□□□□ 0.48
VPS28-206ENST00000526734 GPR35Q9HC97 309 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 NANSQ9NR45 359 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 ARID1AO14497 2285 aa18.03■□□□□ 0.48
VPS28-206ENST00000526734 FLNAP21333 2647 aaKnown RBP18.02■□□□□ 0.48
VPS28-206ENST00000526734 HTR3EA5X5Y0 456 aa18.02■□□□□ 0.48
VPS28-206ENST00000526734 ZNF726A6NNF4 738 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms