RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	MAK	P20794	623 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	EXOC3L2	Q2M3D2	409 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	TFAP2E	Q6VUC0	442 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	NHLRC1	Q6VVB1	395 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	UEVLD	Q8IX04	471 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	ANKK1	Q8NFD2	765 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	UCK2	Q9BZX2	261 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	SAMHD1	Q9Y3Z3	626 aa	Known RBP	18.41	■□□□□ 0.54
CD44-222	ENST00000526025	ARRDC5	A6NEK1	342 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	NPIPB13	A6NJU9	1138 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	OR6C65	A6NJZ3	312 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	NPIPB4	C9JG80	1138 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	HNRNPR	O43390	633 aa	Known RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	TRAF3IP2	O43734	574 aa	Predicted RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	MRPL33	O75394	65 aa	Known RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	DEAF1	O75398	565 aa	Predicted RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	SMNDC1	O75940	238 aa	Known RBP eCLIP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	HPR	P00739	348 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	SAG	P10523	405 aa	Predicted RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	KPNB1	Q14974	876 aa	Known RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	C1orf94	Q6P1W5	598 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	ZFP1	Q6P2D0	407 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	RNASE6	Q93091	150 aa	Known RBP	18.4	■□□□□ 0.54
CD44-222	ENST00000526025	APH1A	Q96BI3	265 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	PSMG3-AS1	Q96PY0	264 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	ELOVL5	Q9NYP7	299 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	AP4S1	Q9Y587	144 aa		18.4	■□□□□ 0.54
CD44-222	ENST00000526025	OR10H3	O60404	316 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	CCNB2	O95067	398 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	FPR3	P25089	353 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	DNAJA1	P31689	397 aa	Known RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	PEX19	P40855	299 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	GPR4	P46093	362 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	PRPS1	P60891	318 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	RPL18	Q07020	188 aa	Known RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	C1D	Q13901	141 aa	Known RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	MICA	Q29983	383 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF770	Q6IQ21	691 aa	Predicted RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	BEND4	Q6ZU67	534 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	ZER1	Q7Z7L7	766 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	OAF	Q86UD1	273 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	KDM8	Q8N371	416 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	FAM46A	Q96IP4	442 aa	Known RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF385A	Q96PM9	386 aa	Known RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	NDEL1	Q9GZM8	345 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	OPN3	Q9H1Y3	402 aa	Predicted RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	DENND2D	Q9H6A0	471 aa	Predicted RBP	18.39	■□□□□ 0.53
CD44-222	ENST00000526025	C12orf49	Q9H741	205 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	VNN3	Q9NY84	501 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	ALPK2	Q86TB3	2170 aa		18.39	■□□□□ 0.53
CD44-222	ENST00000526025	COL12A1	Q99715	3063 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	NKX2-6	A6NCS4	301 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	BLOC1S5-TXNDC5	H3BN57	136 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	GNGT2	O14610	69 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	CDC42EP2	O14613	210 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	CLOCK	O15516	846 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF432	O94892	652 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	AHCY	P23526	432 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	NTF4	P34130	210 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	GSS	P48637	474 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ERF	P50548	548 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	POU3F1	Q03052	451 aa	Predicted RBP	18.38	■□□□□ 0.53
CD44-222	ENST00000526025	FHL1	Q13642	323 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	TAF11	Q15544	211 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF474	Q6S9Z5	364 aa	Predicted RBP	18.38	■□□□□ 0.53
CD44-222	ENST00000526025	CASP12	Q6UXS9	341 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	AAED1	Q7RTV5	226 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF100	Q8IYN0	542 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF610	Q8N9Z0	462 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ACBD4	Q8NC06	268 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	RBM24	Q9BX46	236 aa	Known RBP	18.38	■□□□□ 0.53
CD44-222	ENST00000526025	MALT1	Q9UDY8	824 aa		18.38	■□□□□ 0.53
CD44-222	ENST00000526025	ANKHD1	Q8IWZ3	2542 aa	Known RBP	18.37	■□□□□ 0.53
CD44-222	ENST00000526025	RNF13	O43567	381 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	PTP4A3	O75365	173 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	CLDN1	O95832	211 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	FAS	P25445	335 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	AQP2	P41181	271 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	CLDN17	P56750	224 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	SORD	Q00796	357 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	IL1RL1	Q01638	556 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	ATP6AP1	Q15904	470 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	ZBED5	Q49AG3	693 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	PGBD2	Q6P3X8	592 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025		Q6ZT83	130 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	HDDC2	Q7Z4H3	204 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	LUZP2	Q86TE4	346 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	GABRG1	Q8N1C3	465 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	POMGNT2	Q8NAT1	580 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	OR13C2	Q8NGS9	318 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	GNPDA2	Q8TDQ7	276 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	ZNF775	Q96BV0	537 aa	Predicted RBP	18.37	■□□□□ 0.53
CD44-222	ENST00000526025	NRBF2	Q96F24	287 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	ADAD1	Q96M93	576 aa	Known RBP	18.37	■□□□□ 0.53
CD44-222	ENST00000526025	DGCR6L	Q9BY27	220 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	INIP	Q9NRY2	104 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	SIGLEC7	Q9Y286	467 aa		18.37	■□□□□ 0.53
CD44-222	ENST00000526025	C11orf98	E9PRG8	122 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	TIPRL	O75663	272 aa		18.36	■□□□□ 0.53
CD44-222	ENST00000526025	IGHM	P01871	453 aa		18.36	■□□□□ 0.53

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