RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LRMDAQ9H2I8 198 aa12.63□□□□□ -0.39
NUP54-216ENST00000514901 KRCC1Q9NPI7 259 aaPredicted RBP12.63□□□□□ -0.39
NUP54-216ENST00000514901 UPB1Q9UBR1 384 aa12.63□□□□□ -0.39
NUP54-216ENST00000514901 SEC14L4Q9UDX3 406 aa12.63□□□□□ -0.39
NUP54-216ENST00000514901 RCE1Q9Y256 329 aa12.63□□□□□ -0.39
NUP54-216ENST00000514901 TMEM5Q9Y2B1 443 aa12.63□□□□□ -0.39
NUP54-216ENST00000514901 CELSR2Q9HCU4 2923 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 A0A087WUU8 490 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 LRRN3E7EW58 273 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 GADD45GO95257 159 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 ADAP00813 363 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 EPXP11678 715 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 IFI30P13284 250 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 AHCYP23526 432 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 MAGEA2P43356 314 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 ITGADQ13349 1161 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 FLOT2Q14254 428 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 SFRP5Q5T4F7 317 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 PODNL1Q6PEZ8 512 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 STAC2Q6ZMT1 411 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 NANOGNBQ7Z5D8 188 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 ABHD12BQ7Z5M8 362 aaPredicted RBP12.62□□□□□ -0.39
NUP54-216ENST00000514901 NRMQ8IXM6 262 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 UBE2J2Q8N2K1 259 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 LRRC17Q8N6Y2 441 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 STEAP2Q8NFT2 490 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 SLC7A13Q8TCU3 470 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 C20orf141Q9NUB4 165 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 ASB6Q9NWX5 421 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 TAS2R5Q9NYW4 299 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 PRSS50Q9UI38 385 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 POMPQ9Y244 141 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 UNC79Q9P2D8 2635 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 ABCA4P78363 2273 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 CACNA1DQ01668 2161 aa12.62□□□□□ -0.39
NUP54-216ENST00000514901 BLOC1S5-TXNDC5H3BN57 136 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 RNF13O43567 381 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 DIRAS1O95057 198 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 HPRP00739 348 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 RAP2AP10114 183 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 IL32P24001 234 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 IFNGR2P38484 337 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SLC9A3P48764 834 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 HMGA2P52926 109 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 CLDN17P56750 224 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SPIBQ01892 262 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 FGD3Q5JSP0 725 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 HIST2H2BCQ6DN03 193 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 NIPAL3Q6P499 406 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 TMPRSS11FQ6ZWK6 438 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SSX8Q7RTT4 187 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 CXorf67Q86X51 503 aaPredicted RBP12.61□□□□□ -0.39
NUP54-216ENST00000514901 KISS1RQ969F8 398 aaPredicted RBP12.61□□□□□ -0.39
NUP54-216ENST00000514901 C14orf79Q96F83 325 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 LINC00470Q9BZP3 86 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SLCO5A1Q9H2Y9 848 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 MALT1Q9UDY8 824 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SLC7A8Q9UHI5 535 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 TMCC3Q9ULS5 477 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 TESMINQ9Y4I5 508 aa12.61□□□□□ -0.39
NUP54-216ENST00000514901 SETXQ7Z333 2677 aaKnown RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 DHRS12A0PJE2 317 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 SH3D21A4FU49 640 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 ZNF726A6NNF4 738 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 EFCAB9A8MZ26 197 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 CASKO14936 926 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 TRAF3IP2O43734 574 aaPredicted RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 SLC43A1O75387 559 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 KRT33AO76009 404 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 ZNF432O94892 652 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 GOSR1O95249 250 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 TSPAN19P0C672 248 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 SAGP10523 405 aaPredicted RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 COX5AP20674 150 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 FUT4P22083 530 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 SSTR2P30874 369 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 RRM2P31350 389 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 POU3F1Q03052 451 aaPredicted RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 TGFBR3Q03167 851 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 GK3PQ14409 553 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 DAZAP2Q15038 168 aaPredicted RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 TAF11Q15544 211 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 ZNF787Q6DD87 383 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 TBPL2Q6SJ96 375 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 NHLRC1Q6VVB1 395 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 P2RY8Q86VZ1 359 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 SPATA24Q86W54 205 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 LINC00471Q8N535 108 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 OR52J3Q8NH60 311 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 LINC01560Q8TB33 94 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 LRR1Q96L50 414 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 ADAD1Q96M93 576 aaKnown RBP12.6□□□□□ -0.39
NUP54-216ENST00000514901 ALPK1Q96QP1 1244 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 MED18Q9BUE0 208 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 NDEL1Q9GZM8 345 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 YY1AP1Q9H869 796 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 ZNF226Q9NYT6 803 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 TAS2R16Q9NYV7 291 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 CRIM1Q9NZV1 1036 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 HIF3AQ9Y2N7 669 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms