RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 A0A087WZY1 265 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 SMCO3A2RU48 225 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 MFNGO00587 321 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 PLPP2O43688 288 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 OR2C1O95371 312 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 GSTM3P21266 225 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 PRPH2P23942 346 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 BUD31P41223 144 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 GPR4P46093 362 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 MECP2P51608 486 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 NKX6-1P78426 367 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 HTRA3P83110 453 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 RAB41Q5JT25 222 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 PXKQ7Z7A4 578 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 VRK3Q8IV63 474 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 OR14K1Q8NGZ2 314 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 APOBEC4Q8WW27 367 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 DCUN1D4Q92564 292 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 IGSF8Q969P0 613 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 FOXRED1Q96CU9 486 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 OR2M4Q96R27 311 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ASB8Q9H765 288 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF223Q9UK11 482 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ATG4BQ9Y4P1 393 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 C13orf42A0A1B0GVH6 325 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 SURF4O15260 269 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CRTAPO75718 401 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 PPP1R3DO95685 299 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 PCCBP05166 539 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM157CP0CG43 387 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 AOAHP28039 575 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 NDUFS1P28331 727 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TAS2R20P59543 309 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 RAE1P78406 368 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF585AQ6P3V2 769 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 COMTD1Q86VU5 262 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 GLB1L2Q8IW92 636 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 PACRGQ96M98 296 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TRIB3Q96RU7 358 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TIMP4Q99727 224 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TEX101Q9BY14 249 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TMEM100Q9NV29 134 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 FOXJ3Q9UPW0 622 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 HHLA1C9JL84 531 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 FRS3O43559 492 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ARL6IP5O75915 188 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CSN2P05814 226 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 RHOQP17081 205 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ITPKBP27987 946 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 LPAR6P43657 344 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF280AP59817 542 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TSTA3Q13630 321 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ENTPD8Q5MY95 495 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 LCTLQ6UWM7 567 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 KCTD9Q7L273 389 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ADCK2Q7Z695 626 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF227Q86WZ6 799 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 OR6T1Q8NGN1 323 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 OR1J2Q8NGS2 313 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 OR5K2Q8NHB8 316 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 MR1Q95460 341 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 SGK2Q9HBY8 427 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 PRDM7Q9NQW5 492 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ADARB2Q9NS39 739 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CDHR4A6H8M9 788 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 BLOC1S5-TXNDC5H3BN57 136 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CD3DP04234 171 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CHRM4P08173 479 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CLTBP09497 229 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CD22P20273 847 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TLX1P31314 330 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 PNPLA4P41247 253 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 RAP1AP62834 184 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 BDH1Q02338 343 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 TP53I3Q53FA7 332 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 C4orf17Q53FE4 359 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 C5orf24Q7Z6I8 188 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 THOC6Q86W42 341 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF615Q8N8J6 731 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF610Q8N9Z0 462 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 OTUB2Q96DC9 234 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 CCDC74BQ96LY2 380 aa11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 WSB2Q9NYS7 404 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-213ENST00000511496 A0A0D9SEW6 157 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 ACOD1A6NK06 481 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MKRN2OSH3BPM6 223 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 HSPA12AO43301 675 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 FBXO24O75426 580 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 RPN2P04844 631 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 IL3P08700 152 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MSX1P28360 303 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 APCDD1Q8J025 514 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 MMP21Q8N119 569 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 CFAP52Q8N1V2 620 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 HIST3H2BBQ8N257 126 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 OR5M8Q8NGP6 311 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 OR6N1Q8NGY5 312 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 XAGE5Q8WWM1 108 aa11.05□□□□□ -0.64
LIMCH1-213ENST00000511496 PDCD1LG2Q9BQ51 273 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms