RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KLRF1Q9NZS2 232 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 V9GYH0 126 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C13orf42A0A1B0GVH6 325 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C4orf51C9J302 202 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPR171O14626 319 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MT-ND5P03915 603 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PSMB1P20618 241 aaKnown RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VAMP1P23763 118 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MMP11P24347 488 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GABRA5P31644 462 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PYCR1P32322 319 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HOXA1P49639 335 aaPredicted RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SCGB2B2Q4G0G5 96 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM69Q5SWH9 247 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EIF5AL1Q6IS14 154 aaKnown RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 H3F3CQ6NXT2 135 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MSANTD1Q6ZTZ1 278 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF546Q86UE3 836 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR8S1Q8NH09 359 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELF4Q99607 663 aaPredicted RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ANKRD10Q9NXR5 420 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF226Q9NYT6 803 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ASH2LQ9UBL3 628 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NLRC5Q86WI3 1866 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIR2DS5A0A0G2JLQ3 304 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A0A0G2JNG1 304 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPC4 97 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TUBAL3A6NHL2 446 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIR2DS3K7RE56 304 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HRKO00198 91 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DUX1O43812 170 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FZD7O75084 574 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RBBP9O75884 186 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 F13BP05160 661 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BCKDHBP21953 392 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELAVL4P26378 380 aaKnown RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CD79BP40259 229 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RPS27P42677 84 aaKnown RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RAB13P51153 203 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIR2DS5Q14953 304 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LRFN4Q6PJG9 635 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRILQ7L0X0 811 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ACBD7Q8N6N7 88 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CD300LFQ8TDQ1 290 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PTP4A1Q93096 173 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NECAB3Q96P71 396 aaPredicted RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NPAS1Q99742 590 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LDAHQ9H6V9 325 aa9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RPH3AQ9Y2J0 694 aaPredicted RBP9.9□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TSC2P49815 1807 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SPTY2D1-AS1A0A0U1RR47 76 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IFNA6P05013 189 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ELK1P19419 428 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CXCR1P25024 350 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LSSP48449 732 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SORDQ00796 357 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FZD2Q14332 565 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PGAP1Q75T13 922 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRICKLE2Q7Z3G6 844 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 KIAA0907Q7Z7F0 614 aaPredicted RBP9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 JAZF1Q86VZ6 243 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PFN4Q8NHR9 129 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MR1Q95460 341 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C3orf49Q96BT1 292 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C8orf44Q96CB5 159 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DDX31Q9H8H2 851 aaKnown RBP9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MKKSQ9NPJ1 570 aaPredicted RBP9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FGF21Q9NSA1 209 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SEMA4GQ9NTN9 838 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 POMT2Q9UKY4 750 aa9.9□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ANXA2P2A6NMY6 339 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AGPAT2O15120 278 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MBTPS2O43462 519 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SIGLEC6O43699 453 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IFNA4P05014 189 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ANXA2P07355 339 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PEBP1P30086 187 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GIPRP48546 466 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 E2F1Q01094 437 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 COL19A1Q14993 1142 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C21orf62-AS1Q17RA5 79 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ACSM5Q6NUN0 579 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMUB2Q71RG4 321 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAM220AQ7Z4H9 259 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PAQR8Q8TEZ7 354 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ACOT11Q8WXI4 607 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MED18Q9BUE0 208 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RGCCQ9H4X1 137 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MTHFD2LQ9H903 347 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CENPMQ9NSP4 180 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ASIC5Q9NY37 505 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRQ8 180 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GPR89AB7ZAQ6 455 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SOX1O00570 391 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRH1P02810 166 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SPARCP09486 303 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GPR89BP0CG08 455 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SRFP11831 508 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FBLP22087 321 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ACVR2AP27037 513 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms