RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DACH2Q96NX9 599 aa15.21■□□□□ 0.03
VIM-205ENST00000485947 RBM24Q9BX46 236 aaKnown RBP15.21■□□□□ 0.03
VIM-205ENST00000485947 RNF122Q9H9V4 155 aa15.21■□□□□ 0.03
VIM-205ENST00000485947 RASSF1Q9NS23 344 aa15.21■□□□□ 0.03
VIM-205ENST00000485947 CRIM1Q9NZV1 1036 aa15.21■□□□□ 0.03
VIM-205ENST00000485947 OSGIN1Q9UJX0 560 aa15.21■□□□□ 0.03
VIM-205ENST00000485947 MED12Q93074 2177 aa15.21■□□□□ 0.02
VIM-205ENST00000485947 A8MXE2 369 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 H3BML4 177 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 KLF4O43474 513 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 PIP5K1CO60331 668 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 MITFO75030 526 aaPredicted RBP15.2■□□□□ 0.02
VIM-205ENST00000485947 TGM6O95932 706 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 IFI30P13284 250 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 OSMP13725 252 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 ELK4P28324 431 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 RPS6KA3P51812 740 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 CLDN15P56746 228 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 NPRL3Q12980 569 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 SLC36A3Q495N2 470 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 PDSS1Q5T2R2 415 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 KLHL17Q6TDP4 642 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 TMPRSS11FQ6ZWK6 438 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 GALNT5Q7Z7M9 940 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 UBQLNLQ8IYU4 475 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 STK35Q8TDR2 534 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 MBOAT4Q96T53 435 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 MEPEQ9NQ76 525 aaPredicted RBP15.2■□□□□ 0.02
VIM-205ENST00000485947 GLRX2Q9NS18 164 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 TACC2O95359 2948 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 DCHS2Q6V1P9 2916 aa15.2■□□□□ 0.02
VIM-205ENST00000485947 SPG11Q96JI7 2443 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 TMED7-TICAM2A0A0A6YYA0 188 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 GJE1A6NN92 205 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 A6NNC1 897 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 SLC16A6O15403 523 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 DENRO43583 198 aaKnown RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 NTN1O95631 604 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 CD8BP10966 210 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 POU2F1P14859 743 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 SUCLG1P53597 346 aaKnown RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 ADARB1P78563 741 aaKnown RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 FOXF1Q12946 379 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 SGCBQ16585 318 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 ZIK1Q3SY52 487 aaPredicted RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 C6orf52Q5T4I8 152 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 SPNS3Q6ZMD2 512 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 RASSF6Q6ZTQ3 369 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 ESPNLQ6ZVH7 1005 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 CLDN22Q8N7P3 220 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 PFN4Q8NHR9 129 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 CYGBQ8WWM9 190 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 ZNF524Q96C55 264 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 BPIFA2Q96DR5 249 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 FAM46AQ96IP4 442 aaKnown RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 POLDIP3Q9BY77 421 aaKnown RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 ANKRD60Q9BZ19 345 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 GRIP2Q9C0E4 1043 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 RIBC2Q9H4K1 309 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 FAM118AQ9NWS6 357 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 ELOVL5Q9NYP7 299 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 NDRG3Q9UGV2 375 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 VDAC3Q9Y277 283 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 LRCH1Q9Y2L9 728 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 TMED7Q9Y3B3 224 aa15.19■□□□□ 0.02
VIM-205ENST00000485947 SPIN1Q9Y657 262 aaPredicted RBP15.19■□□□□ 0.02
VIM-205ENST00000485947 MPDZO75970 2070 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 IGKV1D-42A0A075B6H8 117 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 A8MVM7 634 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 ZNF208O43345 1280 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 TCEA1P23193 301 aaKnown RBP15.18■□□□□ 0.02
VIM-205ENST00000485947 FKBP2P26885 142 aaKnown RBP15.18■□□□□ 0.02
VIM-205ENST00000485947 AGFG1P52594 562 aaKnown RBP15.18■□□□□ 0.02
VIM-205ENST00000485947 CLDN20P56880 219 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 LSM11P83369 360 aaKnown RBP eCLIP15.18■□□□□ 0.02
VIM-205ENST00000485947 IL18R1Q13478 541 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 MED21Q13503 144 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 KEAP1Q14145 624 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 GTF2IRD2BQ6EKJ0 949 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 RPL13AP3Q6NVV1 102 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 GTF2IRD2Q86UP8 949 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 GGNQ86UU5 652 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 ADGRG3Q86Y34 549 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 GCNT2Q8N0V5 402 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 STARD4Q96DR4 205 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 SGTBQ96EQ0 304 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 PITX2Q99697 317 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 CLEC4MQ9H2X3 399 aaPredicted RBP15.18■□□□□ 0.02
VIM-205ENST00000485947 FANCFQ9NPI8 374 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 SERINC1Q9NRX5 453 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 GALNT8Q9NY28 637 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 REV1Q9UBZ9 1251 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 CHRNA9Q9UGM1 479 aa15.18■□□□□ 0.02
VIM-205ENST00000485947 MCTS1Q9ULC4 181 aaKnown RBP15.18■□□□□ 0.02
VIM-205ENST00000485947 LOC100130705A0A1B0GUX0 176 aa15.17■□□□□ 0.02
VIM-205ENST00000485947 E9PQ18 207 aa15.17■□□□□ 0.02
VIM-205ENST00000485947 KPNA4O00629 521 aaPredicted RBP15.17■□□□□ 0.02
VIM-205ENST00000485947 SEC14L5O43304 696 aa15.17■□□□□ 0.02
VIM-205ENST00000485947 IL11P20809 199 aa15.17■□□□□ 0.02
VIM-205ENST00000485947 KIR2DL2P43627 348 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms