RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 EFCAB10A6NFE3 127 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 GOLGA8SH3BPF8 625 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 GNGT2O14610 69 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MSH4O15457 936 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 OR6A2O95222 327 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 NDUFB10O96000 172 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 CHRNA1P02708 482 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 HMGN1P05114 100 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 THRBP10828 461 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 IL1RNP18510 177 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 GLRA1P23415 457 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 PTBP1P26599 531 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP40-213ENST00000483216 HOXD10P28358 340 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ETV6P41212 452 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MAGEA3P43357 314 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MRPL19P49406 292 aaKnown RBP4.55□□□□□ -1.68
USP40-213ENST00000483216 SNU13P55769 128 aaKnown RBP4.55□□□□□ -1.68
USP40-213ENST00000483216 OR2B6P58173 313 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ZNF33AQ06730 810 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MRPL28Q13084 256 aaKnown RBP4.55□□□□□ -1.68
USP40-213ENST00000483216 SELENBP1Q13228 472 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MEF2DQ14814 521 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 NEDD8Q15843 81 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 SHROOM1Q2M3G4 852 aaPredicted RBP4.55□□□□□ -1.68
USP40-213ENST00000483216 GLRA4Q5JXX5 417 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 TMEM270Q6UE05 265 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 BAIAP2L2Q6UXY1 529 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ZNF730Q6ZMV8 503 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ASPGQ86U10 573 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 C17orf64Q86WR6 236 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 C10orf107Q8IVU9 208 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MICU2Q8IYU8 434 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 OR9Q1Q8NGQ5 310 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MCFD2Q8NI22 146 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ZNF606Q8WXB4 792 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 CRYGNQ8WXF5 182 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 MYDGFQ969H8 173 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ELMO2Q96JJ3 720 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 B3GALT6Q96L58 329 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 HYLS1Q96M11 299 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 QKIQ96PU8 341 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP40-213ENST00000483216 SORT1Q99523 831 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 RBBP8Q99708 897 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 KCTD14Q9BQ13 255 aaPredicted RBP4.55□□□□□ -1.68
USP40-213ENST00000483216 EBF4Q9BQW3 602 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 LXNQ9BS40 222 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 CALN1Q9BXU9 219 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 SLC22A4Q9H015 551 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 CYP3A43Q9HB55 503 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 POPDC2Q9HBU9 364 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ABCB8Q9NUT2 735 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 HOXC10Q9NYD6 342 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP40-213ENST00000483216 MAT2BQ9NZL9 334 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ABCD2Q9UBJ2 740 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 CD300AQ9UGN4 299 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ZNF639Q9UID6 485 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 TEKT2Q9UIF3 430 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 AURKCQ9UQB9 309 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ERVK-19Q9WJR5 959 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 TRAPPC4Q9Y296 219 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 ACOT9Q9Y305 439 aa4.55□□□□□ -1.68
USP40-213ENST00000483216 LOXHD1Q8IVV2 1947 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 ARPC4-TTLL3A0A0A6YYG9 625 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 A0A1W2PQ72 361 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 CLRN2A0PK11 232 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 ZSCAN5BA6NJL1 495 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 NEDD8-MDP1E9PL57 170 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PSMD11O00231 422 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PRMT5O14744 637 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 MPZL2O60487 215 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 BCAS1O75363 584 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 PDGFBP01127 241 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 CALCAP01258 141 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 IFNA7P01567 189 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 S100A6P06703 90 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 IL7P13232 177 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 CRHBPP24387 322 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 HTR1EP28566 365 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 RFC2P35250 354 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 MAGEA12P43365 314 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PLA2G16P53816 162 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 KCNK10P57789 538 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 RPL10AP62906 217 aaKnown RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 ADARB1P78563 741 aaKnown RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 CDKL1Q00532 357 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 GNA12Q03113 381 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 ELP6Q0PNE2 266 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 CYP51A1Q16850 503 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 HSDL1Q3SXM5 330 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 CCDC58Q4VC31 144 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 SMUG1Q53HV7 270 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 PAGE2BQ5JRK9 111 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 NHLRC3Q5JS37 347 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 SYT6Q5T7P8 510 aaPredicted RBP4.54□□□□□ -1.68
USP40-213ENST00000483216 FAM92BQ6ZTR7 304 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 TMEM26Q6ZUK4 368 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 SLC22A16Q86VW1 577 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 WDR49Q8IV35 697 aa4.54□□□□□ -1.68
USP40-213ENST00000483216 LAX1Q8IWV1 398 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms