RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TOM1O60784 492 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RBMY1DP0C7P1 496 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 CHTF8P0CG12 524 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RBMY1A1P0DJD3 496 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 TBPP20226 339 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PBLDP30039 288 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PRDX3P30048 256 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 EPS15P42566 896 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GLP1RP43220 463 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GYG1P46976 350 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 CDH4P55283 916 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 SCRN3Q0VDG4 424 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GK3PQ14409 553 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 C16orf72Q14CZ0 275 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF77Q15935 545 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 NRF1Q16656 503 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 DGUOKQ16854 277 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 C6orf226Q5I0X4 101 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 CTSL3PQ5NE16 218 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GPR157Q5UAW9 335 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 C1orf94Q6P1W5 598 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 LRRC31Q6UY01 552 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF620Q6ZNG0 422 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RNF165Q6ZSG1 346 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RUFY3Q7L099 469 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 H2BFWTQ7Z2G1 175 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PAQR7Q86WK9 346 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 NBPF5PQ86XG9 351 aaPredicted RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PIANPQ8IYJ0 282 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 KIR2DL5AQ8N109 375 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 TPRX1Q8N7U7 411 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 FNDC5Q8NAU1 212 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 SDR9C7Q8NEX9 313 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 OR6C4Q8NGE1 309 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 KIR2DL5BQ8NHK3 375 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 MYDGFQ969H8 173 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 FBXO32Q969P5 355 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 SLC35E1Q96K37 410 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 C12orf42Q96LP6 360 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PANX2Q96RD6 677 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 CNN2Q99439 309 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 NRIP2Q9BQI9 281 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 FAIM2Q9BWQ8 316 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 NANOGQ9H9S0 305 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 LY9Q9HBG7 655 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 PLGRKTQ9HBL7 147 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GIN1Q9NXP7 522 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 QPCTLQ9NXS2 382 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 KCNIP1Q9NZI2 227 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 IGLV3-22A0A075B6J6 115 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 IGKV2-28A0A075B6P5 120 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A1W2PPV9 198 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 GJE1A6NN92 205 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 PALMO75781 387 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 TNFSF13O75888 250 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 OR7A10O76100 309 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 SNX4O95219 450 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 IGKV2D-28P01615 120 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 MMP1P03956 469 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 UBTFL1P0CB47 393 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ICAM2P13598 275 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ATP1B2P14415 290 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ABOP16442 354 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 NCF2P19878 526 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 CCNE1P24864 410 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 FMO3P31513 532 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 NUDT1P36639 197 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 SSR1P43307 286 aaKnown RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 TPMTP51580 245 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 PDIA2Q13087 525 aaKnown RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 PPIL2Q13356 520 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 GNMTQ14749 295 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 BOLA3Q53S33 107 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 CTRB2Q6GPI1 263 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF546Q86UE3 836 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 TGIF2LXQ8IUE1 241 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 UBE2J2Q8N2K1 259 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 OR1L6Q8NGR2 347 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 FANK1Q8TC84 345 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 PYROXD1Q8WU10 500 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 RDH5Q92781 318 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 N4BP2L2Q92802 583 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 PLEKHA8Q96JA3 519 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 FCRL1Q96LA6 429 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 MS4A4EQ96PG1 132 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 MBOAT4Q96T53 435 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 RASL11BQ9BPW5 248 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM246Q9BRR3 403 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 CHRDL1Q9BU40 450 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 RIOK2Q9BVS4 552 aaKnown RBP1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 OR11A1Q9GZK7 315 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ROGDIQ9GZN7 287 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 GBA3Q9H227 469 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 METTL7AQ9H8H3 244 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 IL26Q9NPH9 171 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 MMP26Q9NRE1 261 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 CLCF1Q9UBD9 225 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC7A8Q9UHI5 535 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 MMP17Q9ULZ9 603 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 IKBKGQ9Y6K9 419 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms