RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 FPR3P25089 353 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 CTSSP25774 331 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 IL1RL1Q01638 556 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 POU3F1Q03052 451 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-209ENST00000469852 POU4F3Q15319 338 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 HSPB2Q16082 182 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 SHQ1Q6PI26 577 aaKnown RBP13.13□□□□□ -0.31
COL9A3-209ENST00000469852 CREB3L2Q70SY1 520 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 FAM214BQ7L5A3 538 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 BTLAQ7Z6A9 289 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 OAFQ86UD1 273 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 IGFN1Q86VF2 1251 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 CDK20Q8IZL9 346 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 LRRC75AQ8NAA5 344 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 RELL2Q8NC24 303 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-209ENST00000469852 GNPDA2Q8TDQ7 276 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 GTPBP3Q969Y2 492 aaKnown RBP13.13□□□□□ -0.31
COL9A3-209ENST00000469852 SDCCAG3Q96C92 435 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 STARD4Q96DR4 205 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 OXGR1Q96P68 337 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 FEVQ99581 238 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 SF3B5Q9BWJ5 86 aaKnown RBP13.13□□□□□ -0.31
COL9A3-209ENST00000469852 C12orf49Q9H741 205 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 FANCFQ9NPI8 374 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 IL20RAQ9UHF4 553 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 HIF3AQ9Y2N7 669 aa13.13□□□□□ -0.31
COL9A3-209ENST00000469852 HTR3EA5X5Y0 456 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 SAC3D1A6NKF1 404 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ZNF724A8MTY0 619 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 MCIDASD6RGH6 385 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 RNF13O43567 381 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 VAMP5O95183 116 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 CGAP01215 116 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 TP53P04637 393 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-209ENST00000469852 HIST1H2ABP04908 130 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 IGFBP1P08833 259 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-209ENST00000469852 BMP5P22003 454 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 SLC9A3P48764 834 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ZP4Q12836 540 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 TSPAN31Q12999 210 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 GK3PQ14409 553 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ZBED5Q49AG3 693 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 EEF1A1P5Q5VTE0 462 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 GTF2IRD2BQ6EKJ0 949 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 THSD4Q6ZMP0 1018 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 HIST3H2AQ7L7L0 130 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 GTF2IRD2Q86UP8 949 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 KIF18BQ86Y91 864 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 OR5K1Q8NHB7 308 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ITLN2Q8WWU7 325 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-209ENST00000469852 STMN2Q93045 179 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 HIST1H2ACQ93077 130 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 CENPNQ96H22 339 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-209ENST00000469852 TXNDC15Q96J42 360 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ZFP3Q96NJ6 502 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 BDH2Q9BUT1 245 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 DGCR6LQ9BY27 220 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 KRCC1Q9NPI7 259 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-209ENST00000469852 GLRX2Q9NS18 164 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 MED29Q9NX70 200 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 OAZ3Q9UMX2 235 aa13.12□□□□□ -0.31
COL9A3-209ENST00000469852 ALPK2Q86TB3 2170 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 NBPF19A0A087WUL8 3843 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 LOC102725191A0A1B0GVB3 256 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 ARRDC5A6NEK1 342 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 PDLIM1O00151 329 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 OR6A2O95222 327 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 CRHP06850 196 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 ZNF23P17027 643 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 ZNF43P17038 809 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 IFNGR2P38484 337 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 MELKQ14680 651 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 RCN1Q15293 331 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 TMEM201Q5SNT2 666 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 PXKQ7Z7A4 578 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 MRGPRGQ86SM5 289 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 UEVLDQ8IX04 471 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 C10orf67Q8IYJ2 551 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 PQLC1Q8N2U9 271 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 LINC00471Q8N535 108 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 ICA1LQ8NDH6 482 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 OR6K3Q8NGY3 331 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 EMC6Q9BV81 110 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 SFXN3Q9BWM7 321 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 PLA2G12AQ9BZM1 189 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 UCK2Q9BZX2 261 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 OPN3Q9H1Y3 402 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-209ENST00000469852 EGLN3Q9H6Z9 239 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 SMURF2Q9HAU4 748 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 GP6Q9HCN6 339 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 MGAT4BQ9UQ53 548 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 NOSIPQ9Y314 301 aaKnown RBP13.11□□□□□ -0.31
COL9A3-209ENST00000469852 EMC9Q9Y3B6 208 aa13.11□□□□□ -0.31
COL9A3-209ENST00000469852 USP9YO00507 2555 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-209ENST00000469852 NKX2-6A6NCS4 301 aa13.1□□□□□ -0.31
COL9A3-209ENST00000469852 WIPF3A6NGB9 483 aa13.1□□□□□ -0.31
COL9A3-209ENST00000469852 FAM90A27PA6NNH2 459 aa13.1□□□□□ -0.31
COL9A3-209ENST00000469852 GPR171O14626 319 aa13.1□□□□□ -0.31
COL9A3-209ENST00000469852 AGFG2O95081 481 aa13.1□□□□□ -0.31
COL9A3-209ENST00000469852 SOX14O95416 240 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms