RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CLDN17P56750 224 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 POU3F1Q03052 451 aaPredicted RBP17.54■□□□□ 0.4
COL9A3-204ENST00000463487 ZP4Q12836 540 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 GK3PQ14409 553 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 IQCCQ4KMZ1 466 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 FBXW9Q5XUX1 488 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 ASRGL1Q7L266 308 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 HDDC2Q7Z4H3 204 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 OAFQ86UD1 273 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 LSRQ86X29 649 aaPredicted RBP17.54■□□□□ 0.4
COL9A3-204ENST00000463487 KDM8Q8N371 416 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 LINC00471Q8N535 108 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 USB1Q9BQ65 265 aaKnown RBP17.54■□□□□ 0.4
COL9A3-204ENST00000463487 REEP1Q9H902 201 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 C20orf141Q9NUB4 165 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 ASB6Q9NWX5 421 aa17.54■□□□□ 0.4
COL9A3-204ENST00000463487 USP9YO00507 2555 aaPredicted RBP17.54■□□□□ 0.4
COL9A3-204ENST00000463487 TRBV4-1A0A0J9YWV2 114 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 TUBAL3A6NHL2 446 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 C11orf98E9PRG8 122 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 MS4A18H0YCH9 400 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 C19orf84I3L1E1 186 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 HNRNPRO43390 633 aaKnown RBP17.53■□□□□ 0.4
COL9A3-204ENST00000463487 PIP5K1CO60331 668 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 SLC43A1O75387 559 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 IGFBP2P18065 325 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 KIR2DL3P43628 341 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 MS4A18Q3C1V0 323 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 OR2T5Q6IEZ7 315 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 NIPAL3Q6P499 406 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 YTHDF3Q7Z739 585 aaKnown RBP17.53■□□□□ 0.4
COL9A3-204ENST00000463487 EPHX4Q8IUS5 362 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 DMRTC2Q8IXT2 367 aaPredicted RBP17.53■□□□□ 0.4
COL9A3-204ENST00000463487 ADGRG5Q8IZF4 528 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 LRRC17Q8N6Y2 441 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 OR4K5Q8NGD3 323 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 OR2T29Q8NH02 315 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 CANT1Q8WVQ1 401 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 ZNF385AQ96PM9 386 aaKnown RBP17.53■□□□□ 0.4
COL9A3-204ENST00000463487 ALPK1Q96QP1 1244 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 CHID1Q9BWS9 393 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 SLCO5A1Q9H2Y9 848 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 B3GAT1Q9P2W7 334 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 GPR52Q9Y2T5 361 aa17.53■□□□□ 0.4
COL9A3-204ENST00000463487 A0A1W2PRG6 482 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 TCRBV3S1A0A5B6 114 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 SH3PXD2BA1X283 911 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 ZNF726A6NNF4 738 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 TNFRSF11BO00300 401 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 GNGT2O14610 69 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 OR10H3O60404 316 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 SERPINI2O75830 405 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 PPP3CBP16298 524 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 PSMB1P20618 241 aaKnown RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 IL32P24001 234 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 UGT2B10P36537 528 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 PRPS1P60891 318 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 GABPB1Q06547 395 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 FAM27E3Q08E93 113 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 ITGADQ13349 1161 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 TMPRSS11FQ6ZWK6 438 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 GABRG1Q8N1C3 465 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 ZIC4Q8N9L1 334 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 STEAP2Q8NFT2 490 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 KISS1RQ969F8 398 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 ADAD1Q96M93 576 aaKnown RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 RAB3IPQ96QF0 476 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 OR10A4Q9H209 315 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 STX18Q9P2W9 335 aaKnown RBP17.52■□□□□ 0.4
COL9A3-204ENST00000463487 MALT1Q9UDY8 824 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 PRSS50Q9UI38 385 aa17.52■□□□□ 0.4
COL9A3-204ENST00000463487 MCIDASD6RGH6 385 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 TRAF3IP2O43734 574 aaPredicted RBP17.51■□□□□ 0.39
COL9A3-204ENST00000463487 ADAP00813 363 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 CST1P01037 141 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 GPR4P46093 362 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 DAP3P51398 398 aaKnown RBP17.51■□□□□ 0.39
COL9A3-204ENST00000463487 TGFBR3Q03167 851 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 RPL18Q07020 188 aaKnown RBP17.51■□□□□ 0.39
COL9A3-204ENST00000463487 TBPL2Q6SJ96 375 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 FAM46AQ96IP4 442 aaKnown RBP17.51■□□□□ 0.39
COL9A3-204ENST00000463487 COL12A1Q99715 3063 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 MCCC2Q9HCC0 563 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 B3GAT2Q9NPZ5 323 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 INIPQ9NRY2 104 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 TAS2R5Q9NYW4 299 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 KCNN3Q9UGI6 736 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 HIF3AQ9Y2N7 669 aa17.51■□□□□ 0.39
COL9A3-204ENST00000463487 HPRP00739 348 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 IGHV3-9P01782 118 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 MAKP20794 623 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 COL8A1P27658 744 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 HMGA2P52926 109 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 FAPQ12884 760 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 ALG10Q5BKT4 473 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 STAC2Q6ZMT1 411 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 SLC35D2Q76EJ3 337 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 SSX8Q7RTT4 187 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.5■□□□□ 0.39
COL9A3-204ENST00000463487 CXorf67Q86X51 503 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms