RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 HPRP00739 348 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 NQO1P15559 274 aaKnown RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 PTNP21246 168 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 CBLP22681 906 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 FOXG1P55316 489 aaPredicted RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 CLDN17P56750 224 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 TGFBR3Q03167 851 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 PUDPQ08623 228 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 PMS2P3Q13401 168 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 PIN1Q13526 163 aaPredicted RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 C1DQ13901 141 aaKnown RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 STK11Q15831 433 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 ACKR1Q16570 336 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 MS4A18Q3C1V0 323 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 NIPAL3Q6P499 406 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 NHLRC1Q6VVB1 395 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 VTCN1Q7Z7D3 282 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 TGIF2LYQ8IUE0 185 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 UEVLDQ8IX04 471 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 C10orf53Q8N6V4 93 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 ANKK1Q8NFD2 765 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 OR5J2Q8NH18 312 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 MUCL1Q96DR8 90 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 TMUB1Q9BVT8 246 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 HEATR1Q9H583 2144 aaKnown RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 BEX4Q9NWD9 120 aaPredicted RBP15.24■□□□□ 0.03
USP39-208ENST00000455732 NDE1Q9NXR1 346 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 ZNF229Q9UJW7 825 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 NOX1Q9Y5S8 564 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 PLCE1Q9P212 2302 aa15.24■□□□□ 0.03
USP39-208ENST00000455732 USF3Q68DE3 2245 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 ZNF587BE7ETH6 402 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 SERPINA1P01009 418 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 IFNW1P05000 195 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 HSD17B1P14061 328 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 ADAM8P78325 824 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 IFI44LQ53G44 452 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 NCMAPQ5T1S8 102 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 PXKQ7Z7A4 578 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 NKAIN4Q8IVV8 208 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 OFCC1Q8IZS5 231 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 FITM2Q8N6M3 262 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 FAM162AQ96A26 154 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 HS6ST2Q96MM7 605 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 PIP5K1AQ99755 562 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 ESRP2Q9H6T0 727 aaKnown RBP15.23■□□□□ 0.03
USP39-208ENST00000455732 UBTD1Q9HAC8 227 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 MEPEQ9NQ76 525 aaPredicted RBP15.23■□□□□ 0.03
USP39-208ENST00000455732 NANSQ9NR45 359 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 ADA2Q9NZK5 511 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 A4GNTQ9UNA3 340 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 SLC25A15Q9Y619 301 aa15.23■□□□□ 0.03
USP39-208ENST00000455732 RPL36A-HNRNPH2H7BZ11 118 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 KPNA4O00629 521 aaPredicted RBP15.22■□□□□ 0.03
USP39-208ENST00000455732 SLC43A1O75387 559 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 ZNF682O95780 498 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 CH25HO95992 272 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 PLAUP00749 431 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 MT-ND1P03886 318 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 ASAH2BP0C7U1 165 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 HOXC12P31275 282 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 IFNA8P32881 189 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 MNAT1P51948 309 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 UGT2B15P54855 530 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 POU3F1Q03052 451 aaPredicted RBP15.22■□□□□ 0.03
USP39-208ENST00000455732 ST3GAL3Q11203 375 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 ZP4Q12836 540 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 SPATS1Q496A3 300 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 SAMD4BQ5PRF9 694 aaKnown RBP15.22■□□□□ 0.03
USP39-208ENST00000455732 ZNF704Q6ZNC4 412 aaPredicted RBP15.22■□□□□ 0.03
USP39-208ENST00000455732 C20orf204Q6ZNR8 217 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 SLC46A3Q7Z3Q1 461 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 KRTAP1-3Q8IUG1 177 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 TMEM123Q8N131 208 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 CCDC197Q8NCU1 140 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 TMEM255BQ8WV15 326 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 TMEM239Q8WW34 195 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 HSH2DQ96JZ2 352 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 ALKBH3Q96Q83 286 aaPredicted RBP15.22■□□□□ 0.03
USP39-208ENST00000455732 OR2M2Q96R28 347 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 CD300AQ9UGN4 299 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 RPS6KA6Q9UK32 745 aa15.22■□□□□ 0.03
USP39-208ENST00000455732 HTR3EA5X5Y0 456 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 UPK3AO75631 287 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 KRT33AO76009 404 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 HLA-DOBP13765 273 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 NCK1P16333 377 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 SH3BGRP55822 239 aaPredicted RBP15.21■□□□□ 0.03
USP39-208ENST00000455732 SLC25A3Q00325 362 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 IL1RL1Q01638 556 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 C9orf135Q5VTT2 229 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 ADAM5Q6NVV9 412 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 C16orf89Q6UX73 402 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 LINGO2Q7L985 606 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 PIK3C3Q8NEB9 887 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 LIPHQ8WWY8 451 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 IGFBPL1Q8WX77 278 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 PIGTQ969N2 578 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 LRR1Q96L50 414 aa15.21■□□□□ 0.03
USP39-208ENST00000455732 GORASP2Q9H8Y8 452 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms