RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	SPPL2A	Q8TCT8	520 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	RNF138	Q8WVD3	245 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	STMN2	Q93045	179 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF524	Q96C55	264 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	HSPBAP1	Q96EW2	488 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	NODAL	Q96S42	347 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	RASL10B	Q96S79	203 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF607	Q96SK3	696 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ADO	Q96SZ5	270 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	TACO1	Q9BSH4	297 aa	Known RBP	4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	PINK1	Q9BXM7	581 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	UGT2B28	Q9BY64	529 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	SEMA6A	Q9H2E6	1030 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF696	Q9H7X3	374 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	DCLRE1B	Q9H816	532 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	MTHFD2L	Q9H903	347 aa	Predicted RBP	4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	NTN4	Q9HB63	628 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	IL1RAP	Q9NPH3	570 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	RLIM	Q9NVW2	624 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ADPRHL2	Q9NX46	363 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	CALML5	Q9NZT1	146 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	NDUFAF4	Q9P032	175 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	NDRG3	Q9UGV2	375 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	CFL2	Q9Y281	166 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	SH3GLB1	Q9Y371	365 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	OR10H1	Q9Y4A9	318 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	PCDHGB3	Q9Y5G1	929 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	MAGED1	Q9Y5V3	778 aa	Predicted RBP	4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	ATP23	Q9Y6H3	246 aa		4.27	□□□□□ -1.73
PTPN4-206	ENST00000441089	PRR14L	Q5THK1	2151 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CDHR4	A6H8M9	788 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	TMEM247	A6NEH6	219 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF561-AS1	K7EIQ3	104 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	AP3D1	O14617	1153 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ACOX3	O15254	700 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CLOCK	O15516	846 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	TCF21	O43680	179 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FADS1	O60427	444 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ICOSLG	O75144	302 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ITGA10	O75578	1167 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SERPINB7	O75635	380 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	OR6B1	O95007	311 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	LYPD3	O95274	346 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	IFNA14	P01570	189 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	THY1	P04216	161 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	AMY2A	P04746	511 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FABP3	P05413	133 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	DBI	P07108	87 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	GKN3P	P0CG01	181 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	IL7R	P16871	459 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	AMY2B	P19961	511 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ATP6V1C1	P21283	382 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	HTR2A	P28223	471 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SOX3	P41225	446 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ACAA2	P42765	397 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	COMP	P49747	757 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	PNLIPRP2	P54317	469 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	GAS1	P54826	345 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	NR1H2	P55055	460 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FBXW4	P57775	412 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	MLF1	P58340	268 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CHRNB3	Q05901	458 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	TOP3A	Q13472	1001 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FGFBP1	Q14512	234 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	DECR1	Q16698	335 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF791	Q3KP31	576 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	LIN52	Q52LA3	116 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FAM98B	Q52LJ0	330 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	OGFRL1	Q5TC84	451 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	RNF220	Q5VTB9	566 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	TBPL2	Q6SJ96	375 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CBLN3	Q6UW01	205 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	MARCH3	Q86UD3	253 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	KRT73	Q86Y46	540 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	PEX5L	Q8IYB4	626 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	HS3ST5	Q8IZT8	346 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	GATS	Q8NAP1	163 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ICA1L	Q8NDH6	482 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FAM71C	Q8NEG0	241 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	OR10G3	Q8NGC4	313 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	OR5L2	Q8NGL0	311 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	OR4C15	Q8NGM1	316 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZFAND2B	Q8WV99	257 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	GEMIN6	Q8WXD5	167 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CNOT9	Q92600	299 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	PROX1	Q92786	737 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	PMM1	Q92871	262 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SARAF	Q96BY9	339 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	NTNG2	Q96CW9	530 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ZNF300	Q96RE9	604 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SLC29A1	Q99808	456 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	FUZ	Q9BT04	418 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SPATA5L1	Q9BVQ7	753 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	DEFB126	Q9BYW3	111 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	DEFB127	Q9H1M4	99 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	CDCP1	Q9H5V8	836 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	ESRP2	Q9H6T0	727 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	TRIM45	Q9H8W5	580 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	PROK2	Q9HC23	129 aa		4.26	□□□□□ -1.73
PTPN4-206	ENST00000441089	SH2D2A	Q9NP31	389 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms