RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZDHHC22Q8N966 263 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CMTM2Q8TAZ6 248 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SMIM4Q8WVI0 70 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TMEM204Q9BSN7 226 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CPEB1Q9BZB8 566 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 METTL9Q9H1A3 318 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PCDHGA1Q9Y5H4 931 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CXorf65A6NEN9 183 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 HIDE1A8MVS5 230 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CLEC3BP05452 202 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CLCNKAP51800 687 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SNRPD2P62316 118 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 RAC1P63000 192 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 VWA2Q5GFL6 755 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PLBD1Q6P4A8 553 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 RNF165Q6ZSG1 346 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 OR4N2Q8NGD1 307 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SHC2P98077 582 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TNFRSF17Q02223 184 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SLC14A1Q13336 389 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SFRP4Q6FHJ7 346 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 LRFN4Q6PJG9 635 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 FAM129CQ86XR2 697 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 LSMEM1Q8N8F7 131 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 INTS12Q96CB8 462 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 SCLYQ96I15 445 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 OSGIN1Q9UJX0 560 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PPT2Q9UMR5 302 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TDRD6O60522 2096 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 TEX50A0A1B0GTY4 177 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PAPLNO95428 1278 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GP1BAP07359 652 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TMEM225BP0DP42 221 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 MTHFD2P13995 350 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ZNF16P17020 682 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 SURF2Q15527 256 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 FBXO48Q5FWF7 155 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TEX30Q5JUR7 227 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CDS1Q92903 461 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ANAPC16Q96DE5 110 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GSTO2Q9H4Y5 243 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PLRG1O43660 514 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 GPX2P18283 190 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ADH7P40394 386 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 MBTPS1Q14703 1052 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 HAGHQ16775 308 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PDE7BQ9NP56 450 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GCM1Q9NP62 436 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ACKR4Q9NPB9 350 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 FCRLBQ6BAA4 426 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PM20D1Q6GTS8 502 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 WDR74Q6RFH5 385 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 DTX3Q8N9I9 347 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 OR52B6Q8NGF0 335 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CPNE4Q96A23 557 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 CDH20Q9HBT6 801 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 NGBQ9NPG2 151 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 DLL4Q9NR61 685 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 LIN7CQ9NUP9 197 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 CACNA1IQ9P0X4 2223 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 A0A1B0GVG6 124 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 VNN1O95497 513 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 DGAT2L6Q6ZPD8 337 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ZNF595Q8IYB9 648 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 EIF4E3Q8N5X7 224 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 OR52E2Q8NGJ4 325 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TAC3Q9UHF0 121 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ZNF728P0DKX0 622 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 TYRP1P17643 537 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ABHD6Q9BV23 337 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SPANXDQ9BXN6 97 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 NDRG4Q9ULP0 352 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 RCE1Q9Y256 329 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SSC5DA1L4H1 1573 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 LOC102723532A0A0G2JNH3 316 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 FOLR1P15328 257 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 RPA2P15927 270 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 HIST1H1TP22492 207 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 ZNF280AP59817 542 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 VAMP3Q15836 100 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ECM1Q16610 540 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 TBPL2Q6SJ96 375 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 TMEM102Q8N9M5 508 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 FAM213BQ8TBF2 198 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 STRADBQ9C0K7 418 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 MMP28Q9H239 520 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 LOC105369274A0A096LPK9 316 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 BSGP35613 385 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ACVR1BP36896 505 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PKIAP61925 76 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ABI3BPQ7Z7G0 1075 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 OR4N4Q8N0Y3 316 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SAMD8Q96LT4 415 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PUS1Q9Y606 427 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS53-204ENST00000437048 TMEM233B4DJY2 109 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 RNASEK-C17orf49H0YIS7 233 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 MTX2O75431 263 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 CD37P11049 281 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 BMI1P35226 326 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 TBPL1P62380 186 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms