RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 SLC25A48Q6ZT89 311 aaKnown RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 LINC00336Q6ZUF6 198 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 AHSA2Q719I0 299 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 FAM57BQ71RH2 274 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 HSD11B1LQ7Z5J1 315 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 C5orf24Q7Z6I8 188 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CYP4Z2PQ8N1L4 340 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 TMEM251Q8N6I4 163 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 ATP6V1C2Q8NEY4 427 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 OR56A4Q8NGH8 313 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 PRSS3P2Q8NHM4 247 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CNIH3Q8TBE1 160 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CD99L2Q8TCZ2 262 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 DLX4Q92988 240 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 RPEQ96AT9 228 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 TADA1Q96BN2 335 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 FAHD2AQ96GK7 314 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CENPNQ96H22 339 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 C4orf45Q96LM5 186 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 PACRGQ96M98 296 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CPXM1Q96SM3 734 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 RBBP8Q99708 897 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 EBNA1BP2Q99848 306 aaKnown RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 PRRT1Q99946 306 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 LAT2Q9GZY6 243 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 SLC22A4Q9H015 551 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 CXXC4Q9H2H0 198 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 RNF41Q9H4P4 317 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 ARMC7Q9H6L4 198 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 PLEKHA1Q9HB21 404 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 PLGRKTQ9HBL7 147 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 SLC25A19Q9HC21 320 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 UBE2TQ9NPD8 197 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 VAPAQ9P0L0 249 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 EIF3KQ9UBQ5 218 aaKnown RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 C19orf25Q9UFG5 118 aaPredicted RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 TMCO1Q9UM00 188 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 UBQLN1Q9UMX0 589 aaKnown RBP3.21□□□□□ -1.9
SF3B1-205ENST00000424674 AMDHD2Q9Y303 409 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 OARD1Q9Y530 152 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 RAI2Q9Y5P3 530 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 WIF1Q9Y5W5 379 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 R4GN57 208 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 ANKRD30BQ9BXX2 1392 aa3.21□□□□□ -1.9
SF3B1-205ENST00000424674 TTC3P53804 2025 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 A0A1B0GUS0 222 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 NKX6-3A6NJ46 265 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ERVV-1B6SEH8 477 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 TMEM238C9JI98 176 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 H3BNH8 94 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 J3KR12 359 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SULT1C2O00338 296 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 EI24O14681 340 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 TNFSF11O14788 317 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 TIMM23O14925 209 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ACOX3O15254 700 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SLC31A1O15431 190 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SOX15O60248 233 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 VAMP5O95183 116 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 RCBTB2O95199 551 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SNAPINO95295 136 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 IGSF6O95976 241 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 TIMP1P01033 207 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SP1P08047 785 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 NGFRP08138 427 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 RPS17P08708 135 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 SNRPAP09012 282 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 HOXB6P17509 224 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 HLA-GP17693 338 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ZP3P21754 424 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 GNLYP22749 145 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ATP5A1P25705 553 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 CD79BP40259 229 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 RBM34P42696 430 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 NR4A2P43354 598 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 BRCC3P46736 316 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 YAP1P46937 504 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 CSNK1A1P48729 337 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 PRLHRP49683 370 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 UGT2B15P54855 530 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 OR2B8PP59922 312 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ERVS71-1P61550 626 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 RPS15AP62244 130 aaKnown RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 C2orf54Q08AI8 447 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 C2orf80Q0P641 193 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 RAB40BQ12829 278 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ILF3Q12906 894 aaKnown RBP eCLIP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 TRAF3Q13114 568 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ZNF268Q14587 947 aaPredicted RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 GNMTQ14749 295 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 MTF1Q14872 753 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 UBE2V2Q15819 145 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 DUSP6Q16828 381 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 EIPR1Q53HC9 387 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 DCAF12Q5T6F0 453 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 OGFRL1Q5TC84 451 aaPredicted RBP3.2□□□□□ -1.9
SF3B1-205ENST00000424674 AWAT2Q6E213 333 aa3.2□□□□□ -1.9
SF3B1-205ENST00000424674 ADNP2Q6IQ32 1131 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms