RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PAQR6Q6TCH4 344 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 Q6ZS92 163 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ASB18Q6ZVZ8 466 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 CXXC5Q7LFL8 322 aaKnown RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 CCDC103Q8IW40 242 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 FAM26EQ8N5C1 309 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 APH1BQ8WW43 257 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 RFKQ969G6 155 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ABTB1Q969K4 478 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 FN3KQ9H479 309 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF696Q9H7X3 374 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 TAS2R5Q9NYW4 299 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 NPIPA1Q9UND3 350 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 B3GNT3Q9Y2A9 372 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 TP53TG5Q9Y2B4 290 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ADAM18Q9Y3Q7 739 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 A0A0J9YW62 118 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 TEX13CA0A0J9YWL9 993 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 A0A1W2PNV4 684 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 WBP4O75554 376 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 TSPAN19P0C672 248 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 GABRB1P18505 474 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 STARP49675 285 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 CLDN20P56880 219 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 CARD18P57730 90 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 GABARAPL2P60520 117 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 POU3F1Q03052 451 aaPredicted RBP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 C19orf57Q0VDD7 668 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 ZP4Q12836 540 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 KRR1Q13601 381 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 OCLNQ16625 522 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 CHMP1BQ7LBR1 199 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 GPAT4Q86UL3 456 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 GID4Q8IVV7 300 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 UEVLDQ8IX04 471 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 TMEM99Q8N816 258 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 LRRC75AQ8NAA5 344 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF540Q8NDQ6 660 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 OR52E2Q8NGJ4 325 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 OR4K13Q8NH42 304 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 C9orf43Q8TAL5 461 aaPredicted RBP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 NEIL3Q8TAT5 605 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 SNRNP27Q8WVK2 155 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF566Q969W8 418 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 RASD2Q96D21 266 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 ZDHHC11Q9H8X9 412 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 CCNB1IP1Q9NPC3 277 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 RASD1Q9Y272 281 aa15.36■□□□□ 0.05
CCDC28B-202ENST00000421922 EIF4E1BA6NMX2 242 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 FZD7O75084 574 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 ENTPD6O75354 484 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC2A10O95528 541 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 RENP00797 406 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 PDGFAP04085 211 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 HIST1H1CP16403 213 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 ENPP1P22413 925 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 NUDT6P53370 316 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 SRYQ05066 204 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 TMEM201Q5SNT2 666 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 HDDC2Q7Z4H3 204 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 GGNQ86UU5 652 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 CPOQ8IVL8 374 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 SDR9C7Q8NEX9 313 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 IPCEF1Q8WWN9 437 aaPredicted RBP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 Q96M85 177 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 TXNIPQ9H3M7 391 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 PAQR5Q9NXK6 330 aaPredicted RBP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 RPL36Q9Y3U8 105 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 NOX1Q9Y5S8 564 aa15.35■□□□□ 0.05
CCDC28B-202ENST00000421922 A6NIZ1 184 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 AQP7P3A6NL99 342 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 PTGES3LE9PB15 166 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TAF4O00268 1085 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 PRODHO43272 600 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 XPNPEP2O43895 674 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CXCL13O43927 109 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 VAMP5O95183 116 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SYNGR4O95473 234 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 BCL10O95999 233 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CRYABP02511 175 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CRHBPP24387 322 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ACVR1BP36896 505 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CDH11P55287 796 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RAC3P60763 192 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RAP1BP61224 184 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RPL27P61353 136 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RPS7P62081 194 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RAP1AP62834 184 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 HSF1Q00613 529 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 LGALS3BPQ08380 585 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CRMP1Q14194 572 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 BCL2A1Q16548 175 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ACKR1Q16570 336 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SMN1Q16637 294 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC25A30Q5SVS4 291 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 FAM205BPQ63HN1 556 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 PLBD1Q6P4A8 553 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 LEG1Q6P5S2 330 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms