RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CCNA2P20248 432 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 KCNJ10P78508 379 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 MERTKQ12866 999 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 GGTLC2Q14390 218 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 LARS2Q15031 903 aaKnown RBP11.29□□□□□ -0.6
LINC00339-202ENST00000416769 RAB35Q15286 201 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 GABRA6Q16445 453 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 FBXW9Q5XUX1 488 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 CYB5R2Q6BCY4 276 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 C3orf33Q6P1S2 294 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 TMPPEQ6ZT21 453 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 CBLL1Q75N03 491 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 FBXL14Q8N1E6 418 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 SLC26A7Q8TE54 656 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 PRR14Q9BWN1 585 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 SHARPINQ9H0F6 387 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 CACYBPQ9HB71 228 aaKnown RBP11.29□□□□□ -0.6
LINC00339-202ENST00000416769 HHATLQ9HCP6 504 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 CTPS2Q9NRF8 586 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 SLC7A8Q9UHI5 535 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 SNX13Q9Y5W8 968 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 ATP23Q9Y6H3 246 aa11.29□□□□□ -0.6
LINC00339-202ENST00000416769 IGKV3D-15A0A087WSY6 115 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 IGHV4-61A0A0C4DH41 118 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 CIB4A0PJX0 185 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ERICH4A6NGS2 130 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 VWC2LB2RUY7 222 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 H3BNH8 94 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 H7C417 338 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SULT2B1O00204 365 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ACOT8O14734 319 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ARPC2O15144 300 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 LMX1BO60663 402 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 TFPIP10646 304 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 NQO1P15559 274 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SLC25A16P16260 332 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 NCK1P16333 377 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 USF1P22415 310 aaPredicted RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 AQP1P29972 269 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 PRKAR1BP31321 381 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SELENOWP63302 87 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 MST1LQ2TV78 715 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 LIN52Q52LA3 116 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SYT14P1Q58G82 188 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 MTX3Q5HYI7 312 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ZNF311Q5JNZ3 666 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 FAM120AOSQ5T036 256 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 LCN8Q6JVE9 175 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 DHRS4L2Q6PKH6 230 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 TMEM108Q6UXF1 575 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 EIF3MQ7L2H7 374 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 DHFR2Q86XF0 187 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ARMC8Q8IUR7 673 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 CMIPQ8IY22 773 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 TOR1AIP2Q8NFQ8 470 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 WDR60Q8WVS4 1066 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 POP5Q969H6 163 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 UTP4Q969X6 686 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 FAM162AQ96A26 154 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 APH1AQ96BI3 265 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 TAMM41Q96BW9 452 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 MSI2Q96DH6 328 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 NSMCE2Q96MF7 247 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SORCS2Q96PQ0 1159 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 RAB3IPQ96QF0 476 aaPredicted RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 ARMC7Q9H6L4 198 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 EVA1AQ9H8M9 152 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 DCAF13Q9NV06 445 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 RPS6KA6Q9UK32 745 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 POMPQ9Y244 141 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 SLC35A3Q9Y2D2 325 aa11.28□□□□□ -0.6
LINC00339-202ENST00000416769 NOSIPQ9Y314 301 aaKnown RBP11.28□□□□□ -0.6
LINC00339-202ENST00000416769 CFAP73A6NFT4 308 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 PDLIM1O00151 329 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 SRD5A1P18405 259 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 RYKP34925 604 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 CRYBA2P53672 197 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 LSM11P83369 360 aaKnown RBP eCLIP11.27□□□□□ -0.61
LINC00339-202ENST00000416769 LGALS3BPQ08380 585 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 CBFBQ13951 182 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 DUSP7Q16829 419 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 RNF220Q5VTB9 566 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 VRK2Q86Y07 508 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 LZICQ8WZA0 190 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 FBXO17Q96EF6 278 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 RADILQ96JH8 1075 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 RSPO3Q9BXY4 272 aaPredicted RBP11.27□□□□□ -0.61
LINC00339-202ENST00000416769 LAT2Q9GZY6 243 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 SLC7A10Q9NS82 523 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 TMEM160Q9NX00 188 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 ADPRHL2Q9NX46 363 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 PRDM4Q9UKN5 801 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 BAG5Q9UL15 447 aa11.27□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF443Q9Y2A4 671 aaPredicted RBP11.27□□□□□ -0.61
LINC00339-202ENST00000416769 LOC100289279A0A1B0GTE1 492 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 AQP12BA6NM10 295 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 TMEM229AB2RXF0 380 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 AP3D1O14617 1153 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 TPST1O60507 370 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 EIF4E2O60573 245 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms