RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SIRT6Q8N6T7 355 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF485Q8NCK3 441 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 SETD6Q8TBK2 473 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC25A43Q8WUT9 341 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 AP3S1Q92572 193 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 TMEM41AQ96HV5 264 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 SH2D2AQ9NP31 389 aa16.47■□□□□ 0.23
CCDC88C-203ENST00000389856 TRDV1A0A1B0GX56 115 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 TMEM72A0PK05 275 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 SNPHO15079 494 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 TBX1O43435 398 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 PPP1R3DO95685 299 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 RPS5P46782 204 aaKnown RBP16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 DOC2BQ14184 412 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 ALG10Q5BKT4 473 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 PRAMEF20Q5VT98 475 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 PAQR6Q6TCH4 344 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 THSD4Q6ZMP0 1018 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 THAP4Q8WY91 577 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 KTI12Q96EK9 354 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 C1GALT1C1Q96EU7 318 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 ERMAPQ96PL5 475 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 POTEKPQ9BYX7 375 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 ASB6Q9NWX5 421 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 IL17BQ9UHF5 180 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 VDAC3Q9Y277 283 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 GPR52Q9Y2T5 361 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 SF3B6Q9Y3B4 125 aaKnown RBP16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 MRPS18BQ9Y676 258 aaKnown RBP16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 PTPRBP23467 1997 aa16.46■□□□□ 0.23
CCDC88C-203ENST00000389856 NPIPB7O75200 414 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 OR6A2O95222 327 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 APOA1P02647 267 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 SDHBP21912 280 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 ITGA3P26006 1051 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 LGALS3BPQ08380 585 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 PLPPR5Q32ZL2 321 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 EMC4Q5J8M3 183 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 STEAP3Q658P3 488 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 TMPRSS11AQ6ZMR5 421 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 POC5Q8NA72 575 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 OR1J4Q8NGS1 313 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 TAAR8Q969N4 342 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CAB39Q9Y376 341 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC22A31A6NKX4 558 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 C17orf51A8MQB3 221 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 BLOC1S5-TXNDC5H3BN57 136 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 BGLAPP02818 100 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 HLA-DPB1P04440 258 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CD14P08571 375 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CCL3P10147 92 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CD53P19397 219 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 TNFSF8P32971 234 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 OC90Q02509 493 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 FOXF1Q12946 379 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 SGCBQ16585 318 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 GPR139Q6DWJ6 353 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CPOQ8IVL8 374 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 LRRC17Q8N6Y2 441 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 FAM98AQ8NCA5 519 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 OTULINQ96BN8 352 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 NRIP3Q9NQ35 241 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 STMN3Q9NZ72 180 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 TNFRSF10DQ9UBN6 386 aa16.45■□□□□ 0.22
CCDC88C-203ENST00000389856 CBR3O75828 277 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 CDRT1O95170 752 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 UQCRC1P31930 480 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 ATP6V1E1P36543 226 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 DSCR4P56555 118 aaPredicted RBP16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 SELENBP1Q13228 472 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 FHL1Q13642 323 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 RTP5Q14D33 572 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC35F1Q5T1Q4 408 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 TIGD3Q6B0B8 471 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 C3orf33Q6P1S2 294 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 ARSKQ6UWY0 536 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 MEPCEQ7L2J0 689 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 BEST3Q8N1M1 668 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 SCAIQ8N9R8 606 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 WDSUB1Q8N9V3 476 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 OR5J2Q8NH18 312 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 MFSD8Q8NHS3 518 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 NXPE2Q96DL1 559 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 MOGAT1Q96PD6 335 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 KCNS3Q9BQ31 491 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 KLHDC3Q9BQ90 382 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 UTP23Q9BRU9 249 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 BARHL1Q9BZE3 327 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 SNTG1Q9NSN8 517 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 ERVK13-1Q9NX77 482 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 QPCTLQ9NXS2 382 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 POLHQ9Y253 713 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 CMAHPQ9Y471 501 aa16.44■□□□□ 0.22
CCDC88C-203ENST00000389856 MCIDASD6RGH6 385 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 LRRN3E7EW58 273 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 J3QRE1 110 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 CTDSP2O14595 271 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 LIFP15018 202 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 CFL1P23528 166 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 AQP2P41181 271 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms