RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DCDC5Q6ZRR9 648 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 LSRQ86X29 649 aaPredicted RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 CISD2Q8N5K1 135 aaKnown RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 LSMEM1Q8N8F7 131 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 CPT1CQ8TCG5 803 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 CHPT1Q8WUD6 406 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 TAAR6Q96RI8 345 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 SLX1AQ9BQ83 275 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 HES7Q9BYE0 225 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 GALNT8Q9NY28 637 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 ETAA1Q9NY74 926 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 STUB1Q9UNE7 303 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 A0A087WZY1 265 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 BHLHE40O14503 412 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 HCN1O60741 890 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 ADAM11O75078 769 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 RCBTB2O95199 551 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 LIMS3P0CW19 117 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 LIMS4P0CW20 117 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 SAGP10523 405 aaPredicted RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 CPEP16870 476 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 BMP7P18075 431 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 RBM34P42696 430 aaKnown RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 CRYBB2P43320 205 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 PPIAP62937 165 aaKnown RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 ALG10BQ5I7T1 473 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 SHFQ7M4L6 423 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 ZNF550Q7Z398 422 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 PHC2Q8IXK0 858 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 CENPSQ8N2Z9 138 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 WDSUB1Q8N9V3 476 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 BBS1Q8NFJ9 593 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 OR13C2Q8NGS9 318 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 ABTB1Q969K4 478 aaPredicted RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 COX4I2Q96KJ9 171 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 ZNF426Q9BUY5 554 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 EXOSC4Q9NPD3 245 aaKnown RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 MEPEQ9NQ76 525 aaPredicted RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 EXOSC3Q9NQT5 275 aaKnown RBP9.21□□□□□ -0.94
VPS53-202ENST00000389040 PLSCR2Q9NRY7 297 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 TBCCD1Q9NVR7 557 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 PPP4R1LQ9P1A2 415 aa9.21□□□□□ -0.94
VPS53-202ENST00000389040 TLN1Q9Y490 2541 aaKnown RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 A0A1B0GVC2 190 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 OR14I1A6ND48 311 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 SERINC4A6NH21 518 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 TFECO14948 347 aaPredicted RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 C1QL1O75973 258 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 IGHG3P01860 377 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 HPNP05981 417 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 TSPAN19P0C672 248 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 S100A5P33763 92 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 DNASE1L1P49184 302 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 DSCR4P56555 118 aaPredicted RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 GPR85P60893 370 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 OR2G6Q5TZ20 316 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 FNDC7Q5VTL7 733 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 SMARCD3Q6STE5 483 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 CXXC5Q7LFL8 322 aaKnown RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 CPOQ8IVL8 374 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 GID4Q8IVV7 300 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 SIAH3Q8IW03 269 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 ZNF440Q8IYI8 595 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 LNX2Q8N448 690 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 FADS6Q8N9I5 356 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 ST6GALNAC3Q8NDV1 305 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 OR4F15Q8NGB8 312 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 GATAD2BQ8WXI9 593 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 GPR137Q96N19 417 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 IFT27Q9BW83 186 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 ZNF703Q9H7S9 590 aaPredicted RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 ISYNA1Q9NPH2 558 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 HINT3Q9NQE9 182 aaKnown RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 FAIMQ9NVQ4 179 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 H2AFY2Q9P0M6 372 aaPredicted RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 SIGLEC7Q9Y286 467 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 EXOGQ9Y2C4 368 aaKnown RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 SPIN1Q9Y657 262 aaPredicted RBP9.2□□□□□ -0.94
VPS53-202ENST00000389040 KALRNO60229 2985 aa9.2□□□□□ -0.94
VPS53-202ENST00000389040 SPTA1P02549 2419 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 LRRC3CA6NJW4 275 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 FAM183AA6NL82 134 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 GTPBP1O00178 669 aaKnown RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 CSTAP01040 98 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 IGHA1P01876 353 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 OCM2P0CE71 109 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 OCMP0CE72 109 aaPredicted RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 CD40LGP29965 261 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 SRD5A2P31213 254 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 SLC1A3P43003 542 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 PPP5CP53041 499 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 RBPJQ06330 500 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 NIPAL3Q6P499 406 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 PLBD1Q6P4A8 553 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ARHGAP11AQ6P4F7 1023 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ULK3Q6PHR2 472 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 MARCH3Q86UD3 253 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 GHDCQ8N2G8 530 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 CADM2Q8N3J6 435 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 TMEM251Q8N6I4 163 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms