RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TOMM34Q15785 309 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC35F3Q8IY50 421 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 ORAI1Q96D31 301 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TSPAN32Q96QS1 320 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 MRPS17Q9Y2R5 130 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 BOLA1Q9Y3E2 137 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 CACNG2Q9Y698 323 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TMEM72A0PK05 275 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TSPAN2O60636 221 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 ZFPL1O95159 310 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 UBL3O95164 117 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 ARSBP15848 533 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 IL12BP29460 328 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 SRP9P49458 86 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 CDK10Q15131 360 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 MESTQ5EB52 335 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 EMC4Q5J8M3 183 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 NANOGNBQ7Z5D8 188 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TIGD4Q8IY51 512 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 PRSS58Q8IYP2 241 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TCTE3Q8IZS6 198 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 RGP1Q92546 391 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 SPATA2Q9UM82 520 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 TCEA1P23193 301 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 CSF2RBP32927 897 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 BTCP35070 178 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HACD4Q5VWC8 232 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 YIPF7Q8N8F6 280 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 ADAD1Q96M93 576 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 GFI1Q99684 422 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 TEKT2Q9UIF3 430 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 ACOD1A6NK06 481 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 H7C1C5 153 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 TO15178 435 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HIST1H2ABP04908 130 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 YES1P07947 543 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 MYF5P13349 255 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 MAGEB1P43366 347 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 MMP15P51511 669 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 RAB25P57735 213 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 LCN6P62502 163 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 YIF1BQ5BJH7 314 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 C1orf189Q5VU69 101 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HLA-DQA1Q5Y7H0 255 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC6A19Q695T7 634 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HIST3H2AQ7L7L0 130 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 KRT74Q7RTS7 529 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 KCTD20Q7Z5Y7 419 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 OR6V1Q8N148 313 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC25A45Q8N413 288 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HSD17B8Q92506 261 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 DAZLQ92904 295 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 HIST1H2ACQ93077 130 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 YIPF5Q969M3 257 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 WWTR1Q9GZV5 400 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 FKRPQ9H9S5 495 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 PAQR5Q9NXK6 330 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 ANKRD10Q9NXR5 420 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 SEMA5BQ9P283 1151 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 MRM2Q9UI43 246 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 ASXL3Q9C0F0 2248 aa18.91■□□□□ 0.62
CCDC88B-203ENST00000359902 A0A087WV48 116 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 NDUFB5O43674 189 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 DUX1O43812 170 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 UPK3AO75631 287 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 WISP1O95388 367 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 TACSTD2P09758 323 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 OR8G3PP0DMU2 310 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 ITPKBP27987 946 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 BTG1P62324 171 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 C1QL3Q5VWW1 255 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 ESPNLQ6ZVH7 1005 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 C17orf50Q8WW18 174 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 MAP6Q96JE9 813 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC41A2Q96JW4 573 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 ZFP3Q96NJ6 502 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 DERL3Q96Q80 235 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 GFM1Q96RP9 751 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 PLSCR3Q9NRY6 295 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 MRPS7Q9Y2R9 242 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 ALG1L2C9J202 215 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 CD3GP09693 182 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 BCKDHBP21953 392 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 CXCR1P25024 350 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 RRAS2P62070 204 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 PITPNAQ00169 270 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 NTRK2Q16620 822 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 NDUFA5Q16718 116 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 TIGD3Q6B0B8 471 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 POMZP3Q6PJE2 187 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 CDC20BQ86Y33 519 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 ELF4Q99607 663 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 DPYSL5Q9BPU6 564 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 VN1R1Q9GZP7 353 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 GALNT9Q9HCQ5 603 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 CAMK2AQ9UQM7 478 aa18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 PCDHGA9Q9Y5G4 932 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-203ENST00000359902 A0A1W2PQD3 144 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 ANKRD61A6NGH8 418 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms