RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ZNF74Q16587 644 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 CRTC2Q53ET0 693 aaPredicted RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 ACSM5Q6NUN0 579 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 RPTNQ6XPR3 784 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 MCEMP1Q8IX19 187 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 UBE2J2Q8N2K1 259 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 GTPBP8Q8N3Z3 284 aaPredicted RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 OR52E2Q8NGJ4 325 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 TIMP4Q99727 224 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 ASPNQ9BXN1 380 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 KRCC1Q9NPI7 259 aaPredicted RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 N6AMT1Q9Y5N5 214 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 KIAA1549Q9HCM3 1950 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 HECTD1Q9ULT8 2610 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 hCG_2014768A0A024R1R8 64 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TRAV36DV7A0A075B6V5 113 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TEX13CA0A0J9YWL9 993 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 BCKDKO14874 412 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 FMO6PO60774 539 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 LYPD3O95274 346 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 HLA-DQA2P01906 255 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 IFNGR1P15260 489 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 EEF1B2P24534 225 aaKnown RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 FMO3P31513 532 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NR1H2P55055 460 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PPP2R2BQ00005 443 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PIGFQ07326 219 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NPRL3Q12980 569 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SNTB1Q13884 538 aaKnown RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 LYPD4Q6UWN0 246 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 CASP12Q6UXS9 341 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ZNF786Q8N393 782 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SVOPLQ8N434 492 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 OR6K6Q8NGW6 343 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PRR7Q8TB68 274 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PMM1Q92871 262 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ZBTB8AQ96BR9 441 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TBX5Q99593 518 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 FAM117AQ9C073 453 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ADAM19Q9H013 955 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 DCHS2Q6V1P9 2916 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TRIM64BA6NI03 449 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 CLPTM1O96005 669 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 MRPL3P09001 348 aaKnown RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 ANXA8P13928 327 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PTGS2P35354 604 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ATP6V1E1P36543 226 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NHSL2Q5HYW2 709 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SPATC1Q76KD6 591 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 MAMDC2Q7Z304 686 aaPredicted RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 DND1Q8IYX4 353 aaKnown RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 ARMC10Q8N2F6 343 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 BPIFB6Q8NFQ5 453 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SCMH1Q96GD3 660 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 HS6ST2Q96MM7 605 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NMNAT3Q96T66 252 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 RHNO1Q9BSD3 238 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 CCDC90BQ9GZT6 254 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ZNF701M0R085 212 aaPredicted RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 KRT33AO76009 404 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TGM6O95932 706 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NAT2P11245 290 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ZNF43P17038 809 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ELK4P28324 431 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 LCN1P31025 176 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 CLDN17P56750 224 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SMUG1Q53HV7 270 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 B3GNT6Q6ZMB0 384 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 TMPPEQ6ZT21 453 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PARP8Q8N3A8 854 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 MEIOBQ8N635 442 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 NEIL3Q8TAT5 605 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 CPT1CQ8TCG5 803 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 ZPLD1Q8TCW7 415 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 GNPDA2Q8TDQ7 276 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 PTDSS2Q9BVG9 487 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 SPIN1Q9Y657 262 aaPredicted RBP8.25□□□□□ -1.09
USP4-202ENST00000351842 CEPT1Q9Y6K0 416 aa8.25□□□□□ -1.09
USP4-202ENST00000351842 DLGAP1O14490 977 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 XPNPEP2O43895 674 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 OR7A10O76100 309 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 HPRP00739 348 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 HTR3AP46098 478 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 BIDP55957 195 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 B3GALT5-AS1P59052 145 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 RAC1P63000 192 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 RUNX1T1Q06455 604 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 FMODQ06828 376 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 ZBED5Q49AG3 693 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 ZNF770Q6IQ21 691 aaPredicted RBP8.24□□□□□ -1.09
USP4-202ENST00000351842 PLBD1Q6P4A8 553 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 ARHGAP11AQ6P4F7 1023 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 PTCHD4Q6ZW05 846 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 GPALPP1Q8IXQ4 340 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 LSM14AQ8ND56 463 aaKnown RBP8.24□□□□□ -1.09
USP4-202ENST00000351842 BBC3Q96PG8 261 aaPredicted RBP8.24□□□□□ -1.09
USP4-202ENST00000351842 ZNF385AQ96PM9 386 aaKnown RBP8.24□□□□□ -1.09
USP4-202ENST00000351842 ALKBH3Q96Q83 286 aaPredicted RBP8.24□□□□□ -1.09
USP4-202ENST00000351842 SEC61A2Q9H9S3 476 aa8.24□□□□□ -1.09
USP4-202ENST00000351842 GRHPRQ9UBQ7 328 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms