RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 DCAF15Q66K64 600 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FBXO15Q8NCQ5 510 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RHOFQ9HBH0 211 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PSORS1C1Q9UIG5 152 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 A0A0B4J2A0 478 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 A6NIZ1 184 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 VPREB1P12018 145 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HOXA6P31267 233 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CDKN2DP55273 166 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 DPY19L4Q7Z388 723 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ARL11Q969Q4 196 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SHPKQ9UHJ6 478 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC6A5Q9Y345 797 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 URODP06132 367 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FUT1P19526 365 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MAP2K3P46734 347 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GABRA2P47869 451 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RIPPLY3P57055 190 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NFKBIDQ8NI38 313 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF296Q8WUU4 475 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 COL25A1Q9BXS0 654 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 BTNL2Q9UIR0 455 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 KLF8O95600 359 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SPP1P10451 314 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF252P-AS1Q0IIN9 211 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HECTD2Q5U5R9 776 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FAHD1Q6P587 224 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR13C4Q8NGS5 318 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 DOHHQ9BU89 302 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TRBC2A0A5B9 178 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 G3V3Q6 166 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SULT1A2P50226 295 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ACVR1Q04771 509 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TUSC3Q13454 348 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C22orf15Q8WYQ4 148 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR5B2Q96R09 309 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC23A1Q9UHI7 598 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FAM220BPB1ANY3 271 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 INMT-MINDY4F8WBC2 141 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SYT5O00445 386 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SNRPEP62304 92 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SPHARQ15513 63 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PPP1R3BQ86XI6 285 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C20orf196Q8IYI0 205 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CBARPQ8N350 705 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC44A3Q8N4M1 653 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HHIPL1Q96JK4 782 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC38A1Q9H2H9 487 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 LSM5Q9Y4Y9 91 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ELOA3CA0A087WX78 387 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF860A6NHJ4 632 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF98A6NK75 572 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CDK3Q00526 305 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 AIMP2Q13155 320 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF630Q2M218 657 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RIMKLAQ8IXN7 391 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SP8Q8IXZ3 490 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TSPAN16Q9UKR8 245 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SCML2Q9UQR0 700 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ISM1B1AKI9 464 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TRIM77I1YAP6 450 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NUDT14O95848 222 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SNRPBP14678 240 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 LIMS1P48059 325 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SIM1P81133 766 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MEGF10Q96KG7 1140 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC35D1Q9NTN3 355 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 LNP1A1A4G5 178 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RPP40O75818 363 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HRH2P25021 359 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PTPN3P26045 913 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GGT2P36268 569 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RBMS2Q15434 407 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GPR155Q7Z3F1 870 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GID4Q8IVV7 300 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF548Q8NEK5 533 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C16orf78Q8WTQ4 265 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FCRL1Q96LA6 429 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GPA33Q99795 319 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TMPRSS5Q9H3S3 457 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 H3BMH7 237 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 H3BQ06 376 aaPredicted RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 ERI3O43414 337 aaKnown RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 CREBL2O60519 120 aaPredicted RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 B3GAT3O94766 335 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 IFNGR1P15260 489 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 ADIGQ0VDE8 80 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 IL24Q13007 206 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 ZBTB34Q8NCN2 500 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 AARSD1Q9BTE6 412 aaKnown RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 MCOLN1Q9GZU1 580 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 CST11Q9H112 138 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 FGF20Q9NP95 211 aaPredicted RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 SERTAD3Q9UJW9 196 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.28□□□□□ -1.88
SYNE1-201ENST00000341594 E7EQ34 232 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 ANHXE9PGG2 379 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 GOSR2O14653 212 aa3.28□□□□□ -1.88
SYNE1-201ENST00000341594 CREG1O75629 220 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms