RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZNF43P17038 809 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 PIN1Q13526 163 aaPredicted RBP13.92□□□□□ -0.18
CLN3-201ENST00000333496 KPNB1Q14974 876 aaKnown RBP13.92□□□□□ -0.18
CLN3-201ENST00000333496 MFSD13AQ14CX5 517 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 RCN1Q15293 331 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 STK11Q15831 433 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 GABRA6Q16445 453 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 TIMM23BQ5SRD1 257 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 C9orf135Q5VTT2 229 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 C16orf89Q6UX73 402 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 NHLRC1Q6VVB1 395 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 DEF8Q6ZN54 512 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 VTCN1Q7Z7D3 282 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 DEFB107AQ8IZN7 70 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 ADPRHL1Q8NDY3 354 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 MPP4Q96JB8 637 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 MUS81Q96NY9 551 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 THTPAQ9BU02 230 aa13.92□□□□□ -0.18
CLN3-201ENST00000333496 LOC102725191A0A1B0GVB3 256 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 CIB4A0PJX0 185 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 OR5H1A6NKK0 313 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 TRAF3IP2O43734 574 aaPredicted RBP13.91□□□□□ -0.18
CLN3-201ENST00000333496 ZNF432O94892 652 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 ATE1O95260 518 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 HLA-DOBP13765 273 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 CLDN17P56750 224 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 SLC34A1Q06495 639 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 NIPAL3Q6P499 406 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 TTC33Q6PID6 262 aaPredicted RBP13.91□□□□□ -0.18
CLN3-201ENST00000333496 LINGO2Q7L985 606 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 NKAIN4Q8IVV8 208 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 SCAIQ8N9R8 606 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 TMEM204Q9BSN7 226 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 AMBRA1Q9C0C7 1298 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 MEPEQ9NQ76 525 aaPredicted RBP13.91□□□□□ -0.18
CLN3-201ENST00000333496 MRPL39Q9NYK5 338 aaKnown RBP13.91□□□□□ -0.18
CLN3-201ENST00000333496 NPAP1Q9NZP6 1156 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 CORINQ9Y5Q5 1042 aa13.91□□□□□ -0.18
CLN3-201ENST00000333496 RAF1P04049 648 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 CD53P19397 219 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 FUT4P22083 530 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 TAS2R41P59536 307 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 PPA1Q15181 289 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 ZNF74Q16587 644 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 NCMAPQ5T1S8 102 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 CBLL1Q75N03 491 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 P2RY8Q86VZ1 359 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 PGAM4Q8N0Y7 254 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 POMGNT2Q8NAT1 580 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 DNAJC9Q8WXX5 260 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 ASPNQ9BXN1 380 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 SPAG4Q9NPE6 437 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 RIMS3Q9UJD0 308 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 SNX13Q9Y5W8 968 aa13.9□□□□□ -0.18
CLN3-201ENST00000333496 A0A1W2PR80 420 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 DPRXA6NFQ7 191 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 KPNA4O00629 521 aaPredicted RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 PLPP3O14495 311 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 UPK3AO75631 287 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 OR5F1O95221 314 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 CH25HO95992 272 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 MT-ATP6P00846 226 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 NCK1P16333 377 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 DNASE1P24855 282 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 MPGP29372 298 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 ART1P52961 327 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 NR1H2P55055 460 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 PMS2P3Q13401 168 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 OR7E24Q6IFN5 339 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 ZNF704Q6ZNC4 412 aaPredicted RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 WDFY1Q8IWB7 410 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 C10orf53Q8N6V4 93 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 LRRC17Q8N6Y2 441 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 RNF148Q8N7C7 305 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 OR52N5Q8NH56 324 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 MUCL1Q96DR8 90 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 KCTD14Q9BQ13 255 aaPredicted RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 POLR2J2Q9GZM3 115 aaKnown RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 POLR2J3Q9H1A7 115 aaKnown RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 PRPF19Q9UMS4 504 aaKnown RBP13.9□□□□□ -0.19
CLN3-201ENST00000333496 A4GNTQ9UNA3 340 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 RCE1Q9Y256 329 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 SLC25A15Q9Y619 301 aa13.9□□□□□ -0.19
CLN3-201ENST00000333496 MED13LQ71F56 2210 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 GSTA4O15217 222 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 FKBP6O75344 327 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 KRT36O76013 467 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 UGT2B15P54855 530 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 ACTR3P61158 418 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 PUDPQ08623 228 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 BLMHQ13867 455 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 KEAP1Q14145 624 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 WDR31Q8NA23 367 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 OR5J2Q8NH18 312 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 LILRB1Q8NHL6 650 aaPredicted RBP13.89□□□□□ -0.19
CLN3-201ENST00000333496 TMEM255BQ8WV15 326 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 LZICQ8WZA0 190 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 MBD6Q96DN6 1003 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 CLPTM1LQ96KA5 538 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 ALKBH3Q96Q83 286 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms