RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ALPK2Q86TB3 2170 aa12.36□□□□□ -0.43
LIMS1-201ENST00000332345 CREBBPQ92793 2442 aa12.36□□□□□ -0.43
LIMS1-201ENST00000332345 PRR14LQ5THK1 2151 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 LRRN3E7EW58 273 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 SLC43A1O75387 559 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 T-ENOLP0DO92 83 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 UMPSP11172 480 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 FUT1P19526 365 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 MSX2P35548 267 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-201ENST00000332345 SELENOPP49908 381 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 NR1H2P55055 460 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 ZP4Q12836 540 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 STK11Q15831 433 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 ALKBH2Q6NS38 261 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 WFDC8Q8IUA0 241 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 SGTBQ96EQ0 304 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 PIK3IP1Q96FE7 263 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 PYURFQ96I23 114 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 NSMCE2Q96MF7 247 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 MUS81Q96NY9 551 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 LINC00470Q9BZP3 86 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 C1orf21Q9H246 121 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 MEPEQ9NQ76 525 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-201ENST00000332345 ENPP4Q9Y6X5 453 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 TEX15Q9BXT5 2789 aa12.35□□□□□ -0.43
LIMS1-201ENST00000332345 OR5H1A6NKK0 313 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ZNF726A6NNF4 738 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ENO4A6NNW6 628 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 DEFB108AA8MXU0 73 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ZNF587BE7ETH6 402 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 J3KTA2 159 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 PDLIM1O00151 329 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 KLF4O43474 513 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 RAD51DO75771 328 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ZNF432O94892 652 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ASAH2BP0C7U1 165 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ITGA2P17301 1181 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 UGT2B15P54855 530 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 TAB1Q15750 504 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 C1QTNF12Q5T7M4 302 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 RINLQ6ZS11 566 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 RRM2BQ7LG56 351 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 CDK20Q8IZL9 346 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 RNF113BQ8IZP6 322 aaKnown RBP12.34□□□□□ -0.43
LIMS1-201ENST00000332345 OFCC1Q8IZS5 231 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 LRRC17Q8N6Y2 441 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 PIK3C3Q8NEB9 887 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 C1orf162Q8NEQ5 155 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-201ENST00000332345 ANKK1Q8NFD2 765 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 PFN4Q8NHR9 129 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 TAS2R5Q9NYW4 299 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 RHCGQ9UBD6 479 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 CSMD1Q96PZ7 3565 aa12.34□□□□□ -0.43
LIMS1-201ENST00000332345 AKAP6Q13023 2319 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 C11orf98E9PRG8 122 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 BLOC1S5-TXNDC5H3BN57 136 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 FFAR1O14842 300 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 ARPC2O15144 300 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 RNF13O43567 381 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 OR7A10O76100 309 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 HPRP00739 348 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 ITGA5P08648 1049 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 HLA-DOBP13765 273 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 RHCEP18577 417 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 POU3F1Q03052 451 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-201ENST00000332345 PPA1Q15181 289 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 GABRA6Q16445 453 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 C9orf135Q5VTT2 229 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 HMBOX1Q6NT76 420 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 NANOGNBQ7Z5D8 188 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 CDH24Q86UP0 819 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 GPR137CQ8N3F9 429 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 C17orf78Q8N4C9 275 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 LIPHQ8WWY8 451 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 MCUR1Q96AQ8 359 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 PLPPR2Q96GM1 343 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 C7orf34Q96L11 122 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 LRR1Q96L50 414 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 ANKRD19PQ9H560 264 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 ESRP2Q9H6T0 727 aaKnown RBP12.33□□□□□ -0.44
LIMS1-201ENST00000332345 NMNAT1Q9HAN9 279 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-201ENST00000332345 TAS2R1Q9NYW7 299 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 NDUFAF4Q9P032 175 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 ACTR3BQ9P1U1 418 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 PRPF19Q9UMS4 504 aaKnown RBP12.33□□□□□ -0.44
LIMS1-201ENST00000332345 LRBAP50851 2863 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 CSMD2Q7Z408 3487 aa12.33□□□□□ -0.44
LIMS1-201ENST00000332345 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-201ENST00000332345 SLC35F4A4IF30 521 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 SIAH2O43255 324 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 TRAF3IP2O43734 574 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-201ENST00000332345 UPK3AO75631 287 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 IFI30P13284 250 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 CDH2P19022 906 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-201ENST00000332345 HOXC12P31275 282 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 FOXG1P55316 489 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-201ENST00000332345 SMIM11AP58511 58 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 NHLRC1Q6VVB1 395 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 ZNF730Q6ZMV8 503 aa12.32□□□□□ -0.44
LIMS1-201ENST00000332345 SLC46A3Q7Z3Q1 461 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms