RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 VSTM2LQ96N03 204 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 FOLH1BQ9HBA9 442 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 UPK3AO75631 287 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 ARFIP1P53367 373 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MFSD13AQ14CX5 517 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 CDONQ4KMG0 1287 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 TCTE1Q5JU00 501 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 NUP210LQ5VU65 1888 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 GPR139Q6DWJ6 353 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 COMMD7Q86VX2 200 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 BOLLQ8N9W6 283 aaKnown RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 NT5CQ8TCD5 201 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 C3orf49Q96BT1 292 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 IRGMA1A4Y4 181 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 RCBTB2O95199 551 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 MPZL1O95297 269 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 PNPP00491 289 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 IGF2P01344 180 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 GAAP10253 952 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 MYF5P13349 255 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 P2RX1P51575 399 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 BTG1P62324 171 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 BDH1Q02338 343 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 HSD17B12Q53GQ0 312 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 RPLP0P6Q8NHW5 317 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SCARF2Q96GP6 870 aaPredicted RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 DUSP15Q9H1R2 295 aaPredicted RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 LYARQ9NX58 379 aaKnown RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 RPS6KB2Q9UBS0 482 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SLC22A13Q9Y226 551 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ARHGEF9O43307 516 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 DHFRP00374 187 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SLC22A6Q4U2R8 563 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ZNF776Q68DI1 518 aaPredicted RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 ATRAIDQ6UW56 229 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ARHGEF39Q8N4T4 335 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ZNF436Q9C0F3 470 aaPredicted RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 OR10H2O60403 315 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 NKX2-2O95096 273 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 TSPAN5P62079 268 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 TUSC1Q2TAM9 212 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ZNF684Q5T5D7 378 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 PRSS35Q8N3Z0 413 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 OR8S1Q8NH09 359 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 OR56B4Q8NH76 319 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ACOT12Q8WYK0 555 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ELMOD3Q96FG2 381 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 CNN2Q99439 309 aaKnown RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 SPRTNQ9H040 489 aaPredicted RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 C2orf72A6NCS6 295 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 CTNSO60931 367 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 MAZP56270 477 aaKnown RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 CHRDL2Q6WN34 429 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 STAC2Q6ZMT1 411 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 Q6ZSR6 202 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 PRSS58Q8IYP2 241 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SRFBP1Q8NEF9 429 aaKnown RBP9.73□□□□□ -0.85
USP28-201ENST00000003302 OR51D1Q8NGF3 324 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SFXN2Q96NB2 322 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 ALG12Q9BV10 488 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SYT4Q9H2B2 425 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 CPNE7Q9UBL6 633 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 KCNG2Q9UJ96 466 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 SERTAD3Q9UJW9 196 aa9.73□□□□□ -0.85
USP28-201ENST00000003302 AP2S1P53680 142 aaPredicted RBP9.72□□□□□ -0.85
USP28-201ENST00000003302 LRRN1Q6UXK5 716 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 BTN2A1Q7KYR7 527 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 C7orf61Q8IZ16 206 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 BAHD1Q8TBE0 780 aaPredicted RBP9.72□□□□□ -0.85
USP28-201ENST00000003302 OMA1Q96E52 524 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 MED30Q96HR3 178 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 WDR13Q9H1Z4 485 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ZCCHC4Q9H5U6 513 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 NRIP3Q9NQ35 241 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ZNF224Q9NZL3 707 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ZNF69Q9UC07 566 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 FOXJ3Q9UPW0 622 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 COLEC10Q9Y6Z7 277 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 APODP05090 189 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ITGA5P08648 1049 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 IL11P20809 199 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 CBFBQ13951 182 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 AANATQ16613 207 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 RELL2Q8NC24 303 aaPredicted RBP9.72□□□□□ -0.85
USP28-201ENST00000003302 OR14A16Q8NHC5 309 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ADAMTS14Q8WXS8 1223 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 TMEM27Q9HBJ8 222 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 MGAT4CQ9UBM8 478 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 NUBP2Q9Y5Y2 271 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 KCNMB2Q9Y691 235 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 C11orf98E9PRG8 122 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 CLPSP04118 112 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 MESTQ5EB52 335 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ZNF767PQ75MW2 155 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 TMPRSS12Q86WS5 348 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 PLPP7Q8NBV4 271 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 WNT2BQ93097 391 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ELSPBP1Q96BH3 223 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 KLHL15Q96M94 604 aa9.72□□□□□ -0.85
USP28-201ENST00000003302 ZNF879B4DU55 563 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms