RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GJA4P35212 333 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MAPK8P45983 427 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 COMPP49747 757 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 RAB28P51157 221 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ERVFRD-1P60508 538 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PAX5Q02548 391 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MRPL49Q13405 166 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF345Q14585 488 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF468Q5VIY5 522 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3CQ6IPX1 549 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 C11orf87Q6NUJ2 197 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF813Q6ZN06 617 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 KCTD9Q7L273 389 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TMPRSS11BQ86T26 416 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ISCA2Q86U28 154 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 C17orf64Q86WR6 236 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TBC1D3Q8IZP1 549 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR4K17Q8NGC6 315 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR52B4Q8NGK2 314 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SMIM4Q8WVI0 70 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MALSU1Q96EH3 234 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR8B4Q96RC9 309 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SLC22A12Q96S37 553 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 UBL7Q96S82 380 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ABHD1Q96SE0 405 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NIPSNAP1Q9BPW8 284 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PBX4Q9BYU1 374 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ASB8Q9H765 288 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 IPPKQ9H8X2 491 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NPDC1Q9NQX5 325 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 DAPL1A0PJW8 107 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 GABARAPH6UMI1 98 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 BNIP3LO60238 219 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FBXO24O75426 580 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ADAP1O75689 374 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PMS2P2O95744 297 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MBPP02686 304 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MT-ND5P03915 603 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NT5EP21589 574 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR1E2P47887 323 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NOVA1P51513 510 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 IL2P60568 153 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ADAM8P78325 824 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TGIF1Q15583 401 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PCGF3Q3KNV8 242 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CRB2Q5IJ48 1285 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ARMC12Q5T9G4 340 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 LRRC69Q6ZNQ3 347 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PRSS45Q7RTY3 260 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CPXM2Q8N436 756 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 RHEBL1Q8TAI7 183 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 HASPINQ8TF76 798 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF516Q92618 1163 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CDS1Q92903 461 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 LCORQ96JN0 433 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 AP1S3Q96PC3 154 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FAM83CQ9BQN1 747 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PCED1AQ9H1Q7 454 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 CSNK1G1Q9HCP0 422 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FZD10Q9ULW2 581 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 RGPD1P0DJD0 1748 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SLC5A10A0PJK1 596 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 C17orf102A2RUQ5 167 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR2M5A3KFT3 312 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NPEPPSL1A6NEC2 478 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PCDH7O60245 1069 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 NPM3O75607 178 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 KAT7O95251 611 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ELFN1P0C7U0 828 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR10J1P30954 320 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 UBE2G2P60604 165 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PRPS1P60891 318 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SRSF11Q05519 484 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 EGR3Q06889 387 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 VEZF1Q14119 521 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF791Q3KP31 576 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FBXO47Q5MNV8 452 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 UNQ6494/PRO21346Q6UXR6 183 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ARHGAP12Q8IWW6 846 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 YAF2Q8IY57 180 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 COMMD1Q8N668 190 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR5B17Q8NGF7 314 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR13D1Q8NGV5 346 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SECTM1Q8WVN6 248 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ISG20Q96AZ6 181 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 HMCESQ96FZ2 354 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 PGAM5Q96HS1 289 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 WDR92Q96MX6 357 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF582Q96NG8 517 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 LYSMD1Q96S90 227 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 FNDC11Q9BVV2 318 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 DPH1Q9BZG8 443 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TUBB1Q9H4B7 451 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MYNNQ9NPC7 610 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 LANCL2Q9NS86 450 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 OR52A1Q9UKL2 312 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 TSPAN16Q9UKR8 245 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 SH2B3Q9UQQ2 575 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms