RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ST3GAL3Q11203 375 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 GPAT4Q86UL3 456 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 STK32CQ86UX6 486 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 DHFR2Q86XF0 187 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 TMEM99Q8N816 258 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 ZNF775Q96BV0 537 aaPredicted RBP15.81■□□□□ 0.12
CLN3-247ENST00000636351 PYURFQ96I23 114 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 LRGUKQ96M69 825 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 SMR3AQ99954 134 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 ASPNQ9BXN1 380 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 TRIM15Q9C019 465 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 BCO1Q9HAY6 547 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 A4GNTQ9UNA3 340 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 ENPP4Q9Y6X5 453 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 ABCA2Q9BZC7 2435 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 M0R082 166 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 MSTNO14793 375 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 THRBP10828 461 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 GRPRP30550 384 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 TRIM25Q14258 630 aaKnown RBP15.8■□□□□ 0.12
CLN3-247ENST00000636351 MFSD13AQ14CX5 517 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 EXOC3L2Q2M3D2 409 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 MTX3Q5HYI7 312 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 Q71RC1 249 aaPredicted RBP15.8■□□□□ 0.12
CLN3-247ENST00000636351 NUFIP2Q7Z417 695 aaKnown RBP15.8■□□□□ 0.12
CLN3-247ENST00000636351 NKAIN4Q8IVV8 208 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 OFCC1Q8IZS5 231 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 ZNF417Q8TAU3 575 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 TMEM255BQ8WV15 326 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 ASB9Q96DX5 294 aa15.8■□□□□ 0.12
CLN3-247ENST00000636351 ZNF587Q96SQ5 575 aaPredicted RBP15.8■□□□□ 0.12
CLN3-247ENST00000636351 NOSIPQ9Y314 301 aaKnown RBP15.8■□□□□ 0.12
CLN3-247ENST00000636351 ZNF724A8MTY0 619 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 FTCDNL1E5RQL4 147 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 GPR171O14626 319 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 HRGP04196 525 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 CD8BP10966 210 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 UMPSP11172 480 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 NQO1P15559 274 aaKnown RBP15.79■□□□□ 0.12
CLN3-247ENST00000636351 RBM34P42696 430 aaKnown RBP15.79■□□□□ 0.12
CLN3-247ENST00000636351 H3F3AP84243 136 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 LTBQ06643 244 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 TRAM2Q15035 370 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 PDK3Q15120 406 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 TMEM225Q6GV28 225 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 LCN8Q6JVE9 175 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 CASP12Q6UXS9 341 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 LINC00114Q6XXX2 140 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 CCDC121Q6ZUS5 278 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 GALNT5Q7Z7M9 940 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 BIVMQ86UB2 503 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 ZNF610Q8N9Z0 462 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 PFN4Q8NHR9 129 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 TMEM239Q8WW34 195 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 PRSS27Q9BQR3 290 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 SLC19A3Q9BZV2 496 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 KLHL4Q9C0H6 718 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 GALNT8Q9NY28 637 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 SEC14L4Q9UDX3 406 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 ING1Q9UK53 422 aaPredicted RBP15.79■□□□□ 0.12
CLN3-247ENST00000636351 CORINQ9Y5Q5 1042 aa15.79■□□□□ 0.12
CLN3-247ENST00000636351 IGKV3D-15A0A087WSY6 115 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 A0A1W2PPR1 153 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 ZNF716A6NP11 495 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 LRRN3E7EW58 273 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 DIRAS1O95057 198 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 GOSR1O95249 250 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 CH25HO95992 272 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 MT-ATP6P00846 226 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 CGAP01215 116 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 BGLAPP02818 100 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 FABP3P05413 133 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 ITGA2P17301 1181 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 HOXC12P31275 282 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 SLC16A1P53985 500 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 UGT2B15P54855 530 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 VLDLRP98155 873 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 PMS2P3Q13401 168 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 FGD3Q5JSP0 725 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.78■□□□□ 0.12
CLN3-247ENST00000636351 ZNF100Q8IYN0 542 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 OR9K2Q8NGE7 335 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 OR6S1Q8NH40 331 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 C18orf12Q96KH6 178 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 HS6ST2Q96MM7 605 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 DACH2Q96NX9 599 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 MOGAT1Q96PD6 335 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 SEPHS2Q99611 448 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 NDUFAF4Q9P032 175 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 RASD1Q9Y272 281 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 MED31Q9Y3C7 131 aa15.78■□□□□ 0.12
CLN3-247ENST00000636351 SH3D21A4FU49 640 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 A8MXE2 369 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 FFAR1O14842 300 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 PIP5K1CO60331 668 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 POU2F1P14859 743 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 RHCEP18577 417 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 CD53P19397 219 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 MS4A2Q01362 244 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 SPIBQ01892 262 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms