RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TEAD3Q99594 435 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 CHRNA9Q9UGM1 479 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 TCFL5Q9UL49 500 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 PMS2P1A4D2B8 440 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 NPIPA2E9PIF3 369 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 NPIPA3F8WFD2 350 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 IDUAP35475 653 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 CD79BP40259 229 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 RBM34P42696 430 aaKnown RBP14.31□□□□□ -0.12
CPSF1-213ENST00000620219 SGCAQ16586 387 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 RASL10BQ96S79 203 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 SLITRK2Q9H156 845 aa14.31□□□□□ -0.12
CPSF1-213ENST00000620219 TRBV2A0A0J9YWF9 115 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 KDM4EB2RXH2 506 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-213ENST00000620219 ALG1L2C9J202 215 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 CTDSP2O14595 271 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 KLHL26Q53HC5 615 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 UBE2UQ5VVX9 321 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 PM20D2Q8IYS1 436 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 TMEM99Q8N816 258 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 NEIL3Q8TAT5 605 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 RALGAPA1Q6GYQ0 2036 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 ANKRD34CP0C6C1 535 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 IGLV3-21P80748 117 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-213ENST00000620219 MC2RQ01718 297 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 CAMK2DQ13557 499 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 VASNQ6EMK4 673 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 FAM131AQ6UXB0 335 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 COX15Q7KZN9 410 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 ZBTB44Q8NCP5 570 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 TAAR8Q969N4 342 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 YIPF6Q96EC8 236 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 PRSS27Q9BQR3 290 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 HDHD2Q9H0R4 259 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 PLA2G3Q9NZ20 509 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 KLHL21Q9UJP4 597 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 TRIM64A6NGJ6 449 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 OR6C70A6NIJ9 312 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 CYB561P49447 251 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 CCL11P51671 97 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 OR12D2P58182 307 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 SLC35F2Q8IXU6 374 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 KLHL13Q9P2N7 655 aa14.3□□□□□ -0.12
CPSF1-213ENST00000620219 TMEM72A0PK05 275 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ADAM8P78325 824 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ARG2P78540 354 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CDK5Q00535 292 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 TGIF1Q15583 401 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 OCLNQ16625 522 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 LRFN4Q6PJG9 635 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 VASH2Q86V25 355 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 UEVLDQ8IX04 471 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ALG12Q9BV10 488 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 HCAR1Q9BXC0 346 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 KCNN2Q9H2S1 579 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 MRPS18BQ9Y676 258 aaKnown RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 DOK2O60496 412 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 SELENOFO60613 162 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 GABRB1P18505 474 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 RORCP51449 518 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 RPS25P62851 125 aaKnown RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 SQSTM1Q13501 440 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 PYDC2Q56P42 97 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ARMC4Q5T2S8 1044 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 DPY19L4Q7Z388 723 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CEACAM19Q7Z692 300 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CROCCP3Q8IVE0 287 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 MISPQ8IVT2 679 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 OR11G2Q8NGC1 345 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 BRIX1Q8TDN6 353 aaKnown RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 WDR12Q9GZL7 423 aaKnown RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CMC2Q9NRP2 79 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 C14orf119Q9NWQ9 140 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 MED29Q9NX70 200 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ING1Q9UK53 422 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 GRIP1Q9Y3R0 1128 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CD63P08962 238 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CLEC2LP0C7M8 214 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 FGF5P12034 268 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 KLHL24Q6TFL4 600 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 RPTNQ6XPR3 784 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CHRNA10Q9GZZ6 450 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 GPX5O75715 221 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 IGKV3-11P04433 115 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 HTR1FP30939 366 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 HTR3AP46098 478 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 LYPD4Q6UWN0 246 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 DPY19L2P2Q6ZN68 376 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 NDUFAF7Q7L592 441 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 OR2AJ1Q8NGZ0 328 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ADIPOR1Q96A54 375 aa14.29□□□□□ -0.12
CPSF1-213ENST00000620219 ZNF346Q9UL40 294 aaKnown RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 CAB39Q9Y376 341 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-213ENST00000620219 FAM166BA8MTA8 275 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 DEFA1P59665 94 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 DEFA3P59666 94 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 DNM1P34Q6PK57 102 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 MAMSTRQ6ZN01 415 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 TMPRSS11FQ6ZWK6 438 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 CLDN22Q8N7P3 220 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms