RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GPAT4Q86UL3 456 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 P2RY8Q86VZ1 359 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 POMGNT2Q8NAT1 580 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 HSD17B8Q92506 261 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SLC25A36Q96CQ1 311 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 MBD6Q96DN6 1003 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 PIK3IP1Q96FE7 263 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 OXGR1Q96P68 337 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 CXXC4Q9H2H0 198 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SLCO5A1Q9H2Y9 848 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SPAG4Q9NPE6 437 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 MRPL39Q9NYK5 338 aaKnown RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SLC7A7Q9UM01 511 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SH3GLB1Q9Y371 365 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 HEATR1Q9H583 2144 aaKnown RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 ARID1AO14497 2285 aa14.21□□□□□ -0.14
TRIM28-213ENST00000598355 HIVEP1P15822 2718 aa14.21□□□□□ -0.14
TRIM28-213ENST00000598355 ENO4A6NNW6 628 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 CXCR6O00574 342 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 DCTN3O75935 186 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 OR5F1O95221 314 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 ATE1O95260 518 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 THRBP10828 461 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 GGT1P19440 569 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 IST1P53990 364 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF74Q16587 644 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 C1QTNF12Q5T7M4 302 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 FBXW10Q5XX13 1052 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 CBLL1Q75N03 491 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 AAED1Q7RTV5 226 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 C17orf78Q8N4C9 275 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 MUS81Q96NY9 551 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 LRRC37BQ96QE4 947 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 CCT8L2Q96SF2 557 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 LINC00470Q9BZP3 86 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 MED13LQ71F56 2210 aa14.2□□□□□ -0.14
TRIM28-213ENST00000598355 ITPR3Q14573 2671 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 OR6C65A6NJZ3 312 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 LRRN3E7EW58 273 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 MS4A18H0YCH9 400 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 FAM107AO95990 144 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 HPRP00739 348 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 RAF1P04049 648 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 PTNP21246 168 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 MPGP29372 298 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 RBM34P42696 430 aaKnown RBP14.19□□□□□ -0.14
TRIM28-213ENST00000598355 OR1E2P47887 323 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 SELENOPP49908 381 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 FAPQ12884 760 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 GABRA6Q16445 453 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 MS4A18Q3C1V0 323 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 SPNS3Q6ZMD2 512 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 SLC46A3Q7Z3Q1 461 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 WFDC8Q8IUA0 241 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 UBE2J2Q8N2K1 259 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 IGFBPL1Q8WX77 278 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 PLPPR2Q96GM1 343 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 PRRC1Q96M27 445 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 FKRPQ9H9S5 495 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 MEPEQ9NQ76 525 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-213ENST00000598355 ARL8BQ9NVJ2 186 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 A4GNTQ9UNA3 340 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 SLC25A15Q9Y619 301 aa14.19□□□□□ -0.14
TRIM28-213ENST00000598355 RAD51DO75771 328 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ASAH2BP0C7U1 165 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF43P17038 809 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 CD53P19397 219 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 PUDPQ08623 228 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 PPA1Q15181 289 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 NCMAPQ5T1S8 102 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 OR7E24Q6IFN5 339 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 TTC33Q6PID6 262 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-213ENST00000598355 DEF8Q6ZN54 512 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 LINGO2Q7L985 606 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 VTCN1Q7Z7D3 282 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 LURAP1LQ8IV03 231 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 PGAM4Q8N0Y7 254 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 TMEM123Q8N131 208 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 KDM8Q8N371 416 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ANKK1Q8NFD2 765 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 OR5J2Q8NH18 312 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 RNF217Q8TC41 542 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 LZICQ8WZA0 190 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ALPK1Q96QP1 1244 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 FOXC2Q99958 501 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 KCTD14Q9BQ13 255 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ASPNQ9BXN1 380 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 NPAP1Q9NZP6 1156 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 TAGLN3Q9UI15 199 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 RIMS3Q9UJD0 308 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 EDARQ9UNE0 448 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 PLEKHA6Q9Y2H5 1048 aa14.18□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF469Q96JG9 3925 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-213ENST00000598355 RPL36A-HNRNPH2H7BZ11 118 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 PLPP3O14495 311 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 PRSS23O95084 383 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 TSPAN19P0C672 248 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 HSD17B1P14061 328 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 CBLP22681 906 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 UGT2B15P54855 530 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms