RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ACTR6Q9GZN1 396 aa13.29□□□□□ -0.28
UPF1-202ENST00000594243 C1orf21Q9H246 121 aa13.29□□□□□ -0.28
UPF1-202ENST00000594243 NANSQ9NR45 359 aa13.29□□□□□ -0.28
UPF1-202ENST00000594243 RASSF1Q9NS23 344 aa13.29□□□□□ -0.28
UPF1-202ENST00000594243 A4GNTQ9UNA3 340 aa13.29□□□□□ -0.28
UPF1-202ENST00000594243 HTR3EA5X5Y0 456 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 OR6C65A6NJZ3 312 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 MS4A18H0YCH9 400 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 OR6A2O95222 327 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 CH25HO95992 272 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 IGF2P01344 180 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 MT-ND1P03886 318 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 HIST1H2ABP04908 130 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 PTNP21246 168 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 EDNRAP25101 427 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 FAPQ12884 760 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 ZNF74Q16587 644 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 MS4A18Q3C1V0 323 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 RINLQ6ZS11 566 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 HIST3H2AQ7L7L0 130 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 BHLHA15Q7RTS1 189 aaPredicted RBP13.28□□□□□ -0.28
UPF1-202ENST00000594243 CYP4Z1Q86W10 505 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 EPHX4Q8IUS5 362 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 POMGNT2Q8NAT1 580 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 OR5J2Q8NH18 312 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 TMEM239Q8WW34 195 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 HSD17B8Q92506 261 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 HIST1H2ACQ93077 130 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 FNDC11Q9BVV2 318 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 POLDIP3Q9BY77 421 aaKnown RBP13.28□□□□□ -0.28
UPF1-202ENST00000594243 FKRPQ9H9S5 495 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 SEC14L4Q9UDX3 406 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 MALT1Q9UDY8 824 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 ZNF229Q9UJW7 825 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 MED31Q9Y3C7 131 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 SNX13Q9Y5W8 968 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 CREBBPQ92793 2442 aa13.28□□□□□ -0.28
UPF1-202ENST00000594243 LRRN3E7EW58 273 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 KPNA4O00629 521 aaPredicted RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 PLPP3O14495 311 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 AKAP8O43823 692 aaKnown RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 LYZL6O75951 148 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 KRT33AO76009 404 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 IGHV3-9P01782 118 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 COX5AP20674 150 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 CRYGSP22914 178 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 IGHV1-2P23083 117 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 MSX2P35548 267 aaPredicted RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 YAP1P46937 504 aaKnown RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 PUDPQ08623 228 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 TRAM2Q15035 370 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 TSPO2Q5TGU0 170 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 NIPAL3Q6P499 406 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 SSX8Q7RTT4 187 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 ABHD12BQ7Z5M8 362 aaPredicted RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 UEVLDQ8IX04 471 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 TMEM255BQ8WV15 326 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 S100PBPQ96BU1 408 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 ZC3HAV1LQ96H79 300 aaKnown RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 PYURFQ96I23 114 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 LURAP1Q96LR2 239 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 NSMCE2Q96MF7 247 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 CLEC4MQ9H2X3 399 aaPredicted RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 SLCO5A1Q9H2Y9 848 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 MEPEQ9NQ76 525 aaPredicted RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 SLC7A10Q9NS82 523 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 TAS2R16Q9NYV7 291 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 B3GAT1Q9P2W7 334 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 PRPF19Q9UMS4 504 aaKnown RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 FAM32AQ9Y421 112 aaKnown RBP13.27□□□□□ -0.29
UPF1-202ENST00000594243 NOX1Q9Y5S8 564 aa13.27□□□□□ -0.29
UPF1-202ENST00000594243 CIB4A0PJX0 185 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 J3KTA2 159 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ARPC2O15144 300 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ADORA3P0DMS8 318 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 UMPSP11172 480 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ITGA2P17301 1181 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 AHCYP23526 432 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 DNAJA1P31689 397 aaKnown RBP13.26□□□□□ -0.29
UPF1-202ENST00000594243 CLDN17P56750 224 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 TGFBR3Q03167 851 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ZP4Q12836 540 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 FOXD4Q12950 439 aaPredicted RBP13.26□□□□□ -0.29
UPF1-202ENST00000594243 TSC22D1Q15714 1073 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 OR7E24Q6IFN5 339 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 C22orf34Q6ZV56 151 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 PXKQ7Z7A4 578 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 P2RY8Q86VZ1 359 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 RNF113BQ8IZP6 322 aaKnown RBP13.26□□□□□ -0.29
UPF1-202ENST00000594243 OFCC1Q8IZS5 231 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ZNF433Q8N7K0 673 aaPredicted RBP13.26□□□□□ -0.29
UPF1-202ENST00000594243 SGTBQ96EQ0 304 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 MUC13Q9H3R2 512 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 NGBQ9NPG2 151 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 TAS2R1Q9NYW7 299 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 RHCGQ9UBD6 479 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 RCE1Q9Y256 329 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ENPP4Q9Y6X5 453 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ABCA12Q86UK0 2595 aa13.26□□□□□ -0.29
UPF1-202ENST00000594243 ENO4A6NNW6 628 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms