RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 YARS2Q9Y2Z4 477 aaKnown RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 CORINQ9Y5Q5 1042 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 WIF1Q9Y5W5 379 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 R4GN57 208 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 FAM47E-STBD1D6RA91 191 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 CBFA2T3O75081 653 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 DXOO77932 396 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 DKK1O94907 266 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 OR6A2O95222 327 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 LALBAP00709 142 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 MRPL3P09001 348 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 JMJD7P0C870 316 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 BMP4P12644 408 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 ICAM2P13598 275 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 CD40LGP29965 261 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 IDUAP35475 653 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 RPS19P39019 145 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 ZNF45Q02386 682 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 EIF3IQ13347 325 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 KRR1Q13601 381 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 SLC35F2Q8IXU6 374 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 OR2T4Q8NH00 348 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 TMEM203Q969S6 136 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 PMEPA1Q969W9 287 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 DDIT4LQ96D03 193 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 ZMYND19Q96E35 227 aaPredicted RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 TBX5Q99593 518 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 KCNN2Q9H2S1 579 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 TMEM9BQ9NQ34 198 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 INIPQ9NRY2 104 aa12.85□□□□□ -0.35
LIG3-205ENST00000585941 MRPL39Q9NYK5 338 aaKnown RBP12.85□□□□□ -0.35
LIG3-205ENST00000585941 NSG1A0A0A6YYJ2 146 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 A0A1W2PQL4 384 aaPredicted RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 C17orf51A8MQB3 221 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 ITGA10O75578 1167 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 F13BP05160 661 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 F8A1P23610 371 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 FKBP2P26885 142 aaKnown RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 CALRP27797 417 aaKnown RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 CDKN2AP42771 156 aaKnown RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 CENPAP49450 140 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 PPP5CP53041 499 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 INSM1Q01101 510 aaPredicted RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 FABP5Q01469 135 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 ZNF85Q03923 595 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 CDCP2Q5VXM1 449 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 C22orf42Q6IC83 251 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 VASH1Q7L8A9 365 aaPredicted RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 LSRQ86X29 649 aaPredicted RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 SCAIQ8N9R8 606 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 OR11G2Q8NGC1 345 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 OR10G3Q8NGC4 313 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 MFSD8Q8NHS3 518 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 FNDC8Q8TC99 324 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 SLC25A46Q96AG3 418 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 TRMT61AQ96FX7 289 aaKnown RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 TIMP4Q99727 224 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 POTEKPQ9BYX7 375 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 FAM117AQ9C073 453 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 ISG20L2Q9H9L3 353 aaKnown RBP12.84□□□□□ -0.35
LIG3-205ENST00000585941 GALNT9Q9HCQ5 603 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 GALNT8Q9NY28 637 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 TAS2R5Q9NYW4 299 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 MED11Q9P086 117 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 PCDHGA1Q9Y5H4 931 aa12.84□□□□□ -0.35
LIG3-205ENST00000585941 IQCMA0A1B0GVH7 501 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 J3QRK9 145 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 XKRYO14609 159 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 RNF13O43567 381 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 PLPP2O43688 288 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 CDRT1O95170 752 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 DLGAP3O95886 979 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 IGHMP01871 453 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 PTGDSP41222 190 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 CASP3P42574 277 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 TBC1D25Q3MII6 688 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 TMEM164Q5U3C3 297 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 OR5M10Q6IEU7 315 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 ARMC10Q8N2F6 343 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 ARIH2OSQ8N7S6 290 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 EXD3Q8N9H8 876 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 ZNF248Q8NDW4 579 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 OR6K6Q8NGW6 343 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 HAVCR2Q8TDQ0 301 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 SLC25A36Q96CQ1 311 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 TSPAN32Q96QS1 320 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 MNTQ99583 582 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 TM9SF2Q99805 663 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 ALG12Q9BV10 488 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 EDEM2Q9BV94 578 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 PTGES2Q9H7Z7 377 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 RPRD1BQ9NQG5 326 aaKnown RBP12.83□□□□□ -0.35
LIG3-205ENST00000585941 SERINC1Q9NRX5 453 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 SNTG1Q9NSN8 517 aa12.83□□□□□ -0.35
LIG3-205ENST00000585941 VPS13AQ96RL7 3174 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 CCDC187A0A096LP49 1063 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 TEX51A0A1B0GUA7 166 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 FTCDNL1E5RQL4 147 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 J3QLW9 94 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 RGS9O75916 674 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms