RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NAT1P18440 290 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 CTXN1P60606 82 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 POU4F2Q12837 409 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 CBFBQ13951 182 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 FAM74A1Q5RGS3 127 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 TMEM52Q8NDY8 209 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 OR6M1Q8NGM8 313 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 OR9A4Q8NGU2 314 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 FLRT3Q9NZU0 649 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 KHNYNO15037 678 aaKnown RBP13.3□□□□□ -0.28
VPS35-210ENST00000568784 MYOGP15173 224 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 M6PRP20645 277 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 GDI1P31150 447 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 CCKBRP32239 447 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 KLF9Q13886 244 aaPredicted RBP13.3□□□□□ -0.28
VPS35-210ENST00000568784 AKIRIN2Q53H80 203 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 FAM69AQ5T7M9 428 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 TANGO2Q6ICL3 276 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 KIRREL2Q6UWL6 708 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 C17orf107Q6ZR85 190 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 SPACA7Q96KW9 195 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 SERINC2Q96SA4 455 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ALG12Q9BV10 488 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 HEXA-AS1Q9H8Q6 139 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 ZNF281Q9Y2X9 895 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 DNAH14Q0VDD8 3507 aa13.3□□□□□ -0.28
VPS35-210ENST00000568784 KLF4O43474 513 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 GPANK1O95872 356 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 GJA4P35212 333 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 PSMD4P55036 377 aaKnown RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 RPS21P63220 83 aaKnown RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 C1orf61Q13536 156 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TUSC1Q2TAM9 212 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 SLC35D2Q76EJ3 337 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 PAQR7Q86WK9 346 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TMEM106AQ96A25 262 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TIMP4Q99727 224 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TRAF4Q9BUZ4 470 aaPredicted RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 TRIM2Q9C040 744 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 RRASP10301 218 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 FBXO42Q6P3S6 717 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 DPY19L4Q7Z388 723 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 PRSS42Q7Z5A4 293 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 GRAMD2AQ8IUY3 354 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 SFTPA2Q8IWL1 248 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ZNRF4Q8WWF5 429 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 MFFQ9GZY8 342 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ATG5Q9H1Y0 275 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TMEM185BQ9H7F4 350 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 PTTG3PQ9NZH4 202 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 C19orf53Q9UNZ5 99 aaPredicted RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 CXorf51AA0A1B0GTR3 108 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 GPR75O95800 540 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 CXCL2P19875 107 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 RPS15P62841 145 aaKnown RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 LTBQ06643 244 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 TAF13Q15543 124 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 NKPD1Q17RQ9 610 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 LIPNQ5VXI9 398 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 LIN54Q6MZP7 749 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 MAMSTRQ6ZN01 415 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ANKRD33Q7Z3H0 272 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 GAL3ST4Q96RP7 486 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 C7orf50Q9BRJ6 194 aaKnown RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 ZNF350Q9GZX5 532 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 MCCC2Q9HCC0 563 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ST6GALNAC2Q9UJ37 374 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 DENND4CQ5VZ89 1909 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ACOT7O00154 380 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 HIST1H2ABP04908 130 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 IGFALSP35858 605 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 P2RX1P51575 399 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 MAT1AQ00266 395 aaKnown RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 HACD4Q5VWC8 232 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 LRRN1Q6UXK5 716 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 HIST3H2AQ7L7L0 130 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ETFBKMTQ8IXQ9 262 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 OR2L13Q8N349 312 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 CSNK1A1LQ8N752 337 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 HIST1H2ACQ93077 130 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 COMMD4Q9H0A8 199 aa13.29□□□□□ -0.28
VPS35-210ENST00000568784 ZNF223Q9UK11 482 aaPredicted RBP13.29□□□□□ -0.28
VPS35-210ENST00000568784 A0A0A6YYC8 382 aaPredicted RBP13.28□□□□□ -0.28
VPS35-210ENST00000568784 PRSS38A1L453 326 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 OR6C68A6NDL8 312 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 GABARAPH6UMI1 98 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 I3L1I5 382 aaPredicted RBP13.28□□□□□ -0.28
VPS35-210ENST00000568784 SPI1P17947 270 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TAS2R20P59543 309 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 RUNX3Q13761 415 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ZNF454Q8N9F8 522 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 OR51S1Q8NGJ8 323 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 SPPL3Q8TCT6 385 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 OR1E3Q8WZA6 343 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 SLC22A18Q96BI1 424 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 B3GNT4Q9C0J1 378 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 NTMQ9P121 344 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 PLEKHA6Q9Y2H5 1048 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 PCDHGA5Q9Y5G8 931 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 PRAF2O60831 178 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms