RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NIPSNAP1Q9BPW8 284 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM110AQ9BQ89 295 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 AIF1LQ9BQI0 150 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RTP3Q9BQQ7 232 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 VPS25Q9BRG1 176 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C11orf70Q9BRQ4 267 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 UTP23Q9BRU9 249 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 ATG101Q9BSB4 218 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FUZQ9BT04 418 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 H2AFJQ9BTM1 129 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 URM1Q9BTM9 101 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 MAGEB5Q9BZ81 275 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 METTL7AQ9H8H3 244 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C3orf14Q9HBI5 128 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CSNK1G1Q9HCP0 422 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C6orf50Q9HD87 102 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 DNAJC4Q9NNZ3 241 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MIEF1Q9NQG6 463 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PNO1Q9NRX1 252 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 AGPAT4Q9NRZ5 378 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GJB4Q9NTQ9 266 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TMEM248Q9NWD8 314 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 HIF1ANQ9NWT6 349 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLCO1C1Q9NYB5 712 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 STOX2Q9P2F5 926 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 CHRNA9Q9UGM1 479 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GNG8Q9UK08 70 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 IKZF3Q9UKT9 509 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PDE10AQ9Y233 779 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RNF6Q9Y252 685 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PRG3Q9Y2Y8 225 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 TBL2Q9Y4P3 447 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 ZNF638Q14966 1978 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 SCN7AQ01118 1682 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLIT1O75093 1534 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 COL1A2P08123 1366 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TIAM2Q8IVF5 1701 aa2.96□□□□□ -1.93
VPS35-208ENST00000568612 UBR1Q8IWV7 1749 aa2.96□□□□□ -1.93
VPS35-208ENST00000568612 ADGRF5Q8IZF2 1346 aa2.96□□□□□ -1.93
VPS35-208ENST00000568612 TET3O43151 1660 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A087WV62 115 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3DA0A087WVF3 549 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3IA0A087WXS9 549 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A087X0T9 212 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3EA0A087X179 549 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A0D9SFI3 127 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TRBV11-1A0A0K0K1C0 115 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A1B0GUH1 482 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A1W2PNV4 684 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A1W2PPE3 182 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 A0A1W2PPV4 95 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TRIM49BA6NDI0 452 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MGAT4DA6NG13 374 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 COLCA2A8K830 154 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3LB9A6J9 549 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF587BE7ETH6 402 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PROB1E7EW31 1015 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 GPR31O00270 319 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SLC1A7O00341 560 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 EI24O14681 340 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CDIPTO14735 213 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MRASO14807 208 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 INPP4BO15327 924 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SEPT4O43236 478 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RGS14O43566 566 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 HBP1O60381 514 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TPST1O60507 370 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TULP3O75386 442 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SC5DO75845 299 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 AQP8O94778 261 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KDM4BO94953 1096 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 AP2A2O94973 939 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 BRI3O95415 125 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 HPP00738 406 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PDGFBP01127 241 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 RPN2P04844 631 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 HOXB5P09067 269 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 HOXC6P09630 235 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TSPAN19P0C672 248 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CTSAP10619 480 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF44P15621 663 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF14P17017 642 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 CHRNB2P17787 502 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF10P21506 573 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 DRD1P21728 446 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MSR1P21757 451 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CD72P21854 359 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 UCP1P25874 307 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PTPN3P26045 913 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CD82P27701 267 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 IL12BP29460 328 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 GNRHRP30968 328 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 NNMTP40261 264 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MATKP42679 507 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR3A1P47881 315 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 GCLMP48507 274 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PPT1P50897 306 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ATP5IP56385 69 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 SLC37A1P57057 533 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 VSX2P58304 361 aaPredicted RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms