RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 RIMS3Q9UJD0 308 aa8.66□□□□□ -1.02
CLK3-220ENST00000567992 RASD1Q9Y272 281 aa8.66□□□□□ -1.02
CLK3-220ENST00000567992 B3GALT5Q9Y2C3 310 aa8.66□□□□□ -1.02
CLK3-220ENST00000567992 ABCA4P78363 2273 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 LOC102725191A0A1B0GVB3 256 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 A0A1W2PPR1 153 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 DEFB108AA8MXU0 73 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 MS4A18H0YCH9 400 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 KPNA4O00629 521 aaPredicted RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 ARPC2O15144 300 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 MRPL33O75394 65 aaKnown RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 ZNF432O94892 652 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 CNOT4O95628 575 aaKnown RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 IGHV3-9P01782 118 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 IFNW1P05000 195 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 ITGA5P08648 1049 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 THRBP10828 461 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 TCN1P20061 433 aaPredicted RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 CBLP22681 906 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 CRYGSP22914 178 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 LOXP28300 417 aaPredicted RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 YAP1P46937 504 aaKnown RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 MNAT1P51948 309 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 LSM11P83369 360 aaKnown RBP eCLIP8.65□□□□□ -1.02
CLK3-220ENST00000567992 MXRA7P84157 204 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 P2RY6Q15077 328 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 MS4A18Q3C1V0 323 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 SPATS1Q496A3 300 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 IQCCQ4KMZ1 466 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 SFRP5Q5T4F7 317 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 FBXW9Q5XUX1 488 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 ANKRD34AQ69YU3 496 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 CASP12Q6UXS9 341 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 H1FNTQ75WM6 255 aaPredicted RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 TRPM8Q7Z2W7 1104 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 WDFY1Q8IWB7 410 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 ZNF100Q8IYN0 542 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 OFCC1Q8IZS5 231 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 PFN4Q8NHR9 129 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 S100PBPQ96BU1 408 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 C7orf34Q96L11 122 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 ACTR6Q9GZN1 396 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 OR10A4Q9H209 315 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 FANCFQ9NPI8 374 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 RASSF1Q9NS23 344 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 C20orf141Q9NUB4 165 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 MRPL39Q9NYK5 338 aaKnown RBP8.65□□□□□ -1.02
CLK3-220ENST00000567992 MAGEL2Q9UJ55 1249 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 GPR52Q9Y2T5 361 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 CORINQ9Y5Q5 1042 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 SPG11Q96JI7 2443 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 CELSR1Q9NYQ6 3014 aa8.65□□□□□ -1.02
CLK3-220ENST00000567992 RAI1Q7Z5J4 1906 aaPredicted RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 ENO4A6NNW6 628 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 PLPP3O14495 311 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 PIP5K1CO60331 668 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 LYZL6O75951 148 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 UBOX5O94941 541 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 CH25HO95992 272 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 MT-ATP6P00846 226 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 IGF2P01344 180 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 MT-ND1P03886 318 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 HRGP04196 525 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 ASAH2BP0C7U1 165 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 HLA-DOBP13765 273 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 PPP3CBP16298 524 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 ATP6V1B2P21281 511 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 GTF2E2P29084 291 aaKnown RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 RBM34P42696 430 aaKnown RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 SELENOPP49908 381 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 VLDLRP98155 873 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 LGALS3BPQ08380 585 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 ITGADQ13349 1161 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 MFSD13AQ14CX5 517 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 TSPO2Q5TGU0 170 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 TMEM225Q6GV28 225 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 TTC33Q6PID6 262 aaPredicted RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 LINGO2Q7L985 606 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 AAED1Q7RTV5 226 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 YTHDF3Q7Z739 585 aaKnown RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 LRRC17Q8N6Y2 441 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 ZNF433Q8N7K0 673 aaPredicted RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 TMEM239Q8WW34 195 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 KISS1RQ969F8 398 aaPredicted RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 OXGR1Q96P68 337 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 MED18Q9BUE0 208 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 FKRPQ9H9S5 495 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 SLC7A10Q9NS82 523 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 TAS2R1Q9NYW7 299 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 C6orf203Q9P0P8 240 aaPredicted RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 RHCGQ9UBD6 479 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 NDRG3Q9UGV2 375 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 ZNF229Q9UJW7 825 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 RPS6KA6Q9UK32 745 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 SAMD4AQ9UPU9 718 aaKnown RBP8.64□□□□□ -1.03
CLK3-220ENST00000567992 ENPP4Q9Y6X5 453 aa8.64□□□□□ -1.03
CLK3-220ENST00000567992 KLF4O43474 513 aa8.63□□□□□ -1.03
CLK3-220ENST00000567992 UPK3AO75631 287 aa8.63□□□□□ -1.03
CLK3-220ENST00000567992 PDE5AO76074 875 aa8.63□□□□□ -1.03
CLK3-220ENST00000567992 GOSR1O95249 250 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms