RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ANKRD61A6NGH8 418 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SSNA1O43805 119 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SDC3O75056 442 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ITGA10O75578 1167 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 PPP1R3DO95685 299 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 AK1P00568 194 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ANKRD34CP0C6C1 535 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 OR2T7P0C7T2 308 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SMIM10L1P0DMW3 83 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SLC6A6P31641 620 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 GDI2P50395 445 aaKnown RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 AFF3P51826 1226 aaKnown RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 GBX2P52951 348 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 RUNX2Q13950 521 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FGFBP1Q14512 234 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 CDK5R1Q15078 307 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 DEFB134Q4QY38 66 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 RNASE12Q5GAN4 147 aaKnown RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 LYSMD4Q5XG99 296 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 PMS2CLQ68D20 193 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 GPR139Q6DWJ6 353 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FBXO42Q6P3S6 717 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ARHGAP11AQ6P4F7 1023 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FAM98AQ8NCA5 519 aaKnown RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 OR2T27Q8NH04 317 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 DACT3Q96B18 629 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 NXPE2Q96DL1 559 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 TM4SF19Q96DZ7 209 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 PEX11GQ96HA9 241 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SMIM10Q96HG1 83 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 EVA1AQ9H8M9 152 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FBXO34Q9NWN3 711 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SLC22A7Q9Y694 548 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 TMEM131Q92545 1883 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1B0GVT2 93 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1W2PPK0 400 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 MT-ND4P03905 459 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 GYPBP06028 91 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 CD1AP06126 327 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 TYRP1P17643 537 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF81P51508 661 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 SNRPNP63162 240 aaKnown RBP12.13□□□□□ -0.47
VPS4A-204ENST00000566354 SIRPAP78324 504 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 GRK1Q15835 563 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 TP53I3Q53FA7 332 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 FAM69AQ5T7M9 428 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 OR51Q1Q8NH59 317 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF671Q8TAW3 534 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 LMX1AQ8TE12 382 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 SLC37A2Q8TED4 501 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 PHYHIPQ92561 330 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 SLC22A18Q96BI1 424 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 PELI1Q96FA3 418 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 ARL5BQ96KC2 179 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 LRFN5Q96NI6 719 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 TNFRSF13CQ96RJ3 184 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 MNTQ99583 582 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 AKAP7Q9P0M2 348 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-204ENST00000566354 SERTAD3Q9UJW9 196 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 NPTNQ9Y639 398 aa12.13□□□□□ -0.47
VPS4A-204ENST00000566354 TNRC6BQ9UPQ9 1833 aaKnown RBP12.13□□□□□ -0.47
VPS4A-204ENST00000566354 NPIPA5A0A0B4J1W7 369 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 NPIPA7E9PJI5 369 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF593O00488 134 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 TOR1AO14656 332 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF749O43361 778 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 SERPINI2O75830 405 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 NPIPA8P0DM63 369 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF10P21506 573 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 DRD5P21918 477 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 UBE2NLQ5JXB2 153 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 CLLU1Q5K131 121 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ALKBH2Q6NS38 261 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 RPL22L1Q6P5R6 122 aaKnown RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 SYT9Q86SS6 491 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 LSRQ86X29 649 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 SLITRK4Q8IW52 837 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 POMGNT2Q8NAT1 580 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 BEST4Q8NFU0 473 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZCCHC10Q8TBK6 192 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 DPCDQ9BVM2 203 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 NARFLQ9H6Q4 476 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 NRIP3Q9NQ35 241 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ARID1BQ8NFD5 2236 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 A0A0B4J2E0 115 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1B0GX12 115 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 B4DGG1 531 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 PRSS44E7EML9 344 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 GATCO43716 136 aaKnown RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 PRAF2O60831 178 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ATP1B1P05026 303 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 SYPP08247 313 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 GDNFP39905 211 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 RBM34P42696 430 aaKnown RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 RPS11P62280 158 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 GPR18Q14330 331 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 FIGNL1Q6PIW4 674 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ESPNLQ6ZVH7 1005 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 PRSS45Q7RTY3 260 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF527Q8NB42 609 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms