RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 C2orf27AQ580R0 203 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 UBE2NLQ5JXB2 153 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 PIP5KL1Q5T9C9 394 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 OLFML2AQ68BL7 652 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 SLC36A1Q7Z2H8 476 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 TCTEX1D2Q8WW35 142 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 C14orf79Q96F83 325 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 MYADMQ96S97 322 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 CXorf36Q9H7Y0 433 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 TCF7L1Q9HCS4 588 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 DZANK1Q9NVP4 752 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 DAPL1A0PJW8 107 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 ZNF705EA8MWA4 302 aaPredicted RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 H0YIV9 168 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 FLRT2O43155 660 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 FARS2O95363 451 aaKnown RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 NTN1O95631 604 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 NQO2P16083 231 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 MECP2P51608 486 aaKnown RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 RELQ04864 619 aaPredicted RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 PLEKHN1Q494U1 663 aaPredicted RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 NUDT18Q6ZVK8 323 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 CPOQ8IVL8 374 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 YAF2Q8IY57 180 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 CPNE2Q96FN4 548 aaPredicted RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 CNTNAP3BQ96NU0 1288 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 GGACTQ9BVM4 153 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 ZDHHC5Q9C0B5 715 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 ZCCHC2Q9C0B9 1178 aaKnown RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 LAMA1P25391 3075 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 TRAPPC13A5PLN9 417 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 PLPP2O43688 288 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 NDUFB7P17568 137 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 C21orf62-AS1Q17RA5 79 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 AKIRIN2Q53H80 203 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 LINC00471Q8N535 108 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 OR10H4Q8NGA5 316 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 OR9A1PQ8NGU1 263 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 FAM46AQ96IP4 442 aaKnown RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 DERL3Q96Q80 235 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 RSRP1Q9BUV0 290 aa12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 TRMT61BQ9BVS5 477 aaKnown RBP12.89□□□□□ -0.35
GTF3C1-203ENST00000562609 A0A087WUU8 490 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 C1QTNF3-AMACRE9PGA6 284 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 SYT5O00445 386 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 ANXA2P07355 339 aaKnown RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 APEHP13798 732 aaKnown RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 ZNF14P17017 642 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 PSMB5P28074 263 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 LAP3P28838 519 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 ACTR1BP42025 376 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 VASPP50552 380 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 TMEM44Q2T9K0 475 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 FAM76BQ5HYJ3 339 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 TEX30Q5JUR7 227 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 MED27Q6P2C8 311 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 SLC29A4Q7RTT9 530 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 MMP21Q8N119 569 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OR6T1Q8NGN1 323 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 PAQR8Q8TEZ7 354 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 BBS4Q96RK4 519 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 NAA11Q9BSU3 229 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 EDEM2Q9BV94 578 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 SEC11CQ9BY50 192 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 BRF2Q9HAW0 419 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 HINT3Q9NQE9 182 aaKnown RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 THAP10Q9P2Z0 257 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 PLXND1Q9Y4D7 1925 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 KIAA1549LQ6ZVL6 1849 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 J3QRE1 110 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 TERTO14746 1132 aaKnown RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OIP5O43482 229 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 FADS1O60427 444 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OR8U8P0C7N1 319 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 TAS2R50P59544 299 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OLIG3Q7RTU3 272 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 KCNRGQ8N5I3 272 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OR2L2Q8NH16 312 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 OR5J2Q8NH18 312 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 BBS10Q8TAM1 723 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 C14orf144Q96I85 54 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 VRK1Q99986 396 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 GDE1Q9NZC3 331 aa12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 ZNF230Q9UIE0 474 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-203ENST00000562609 IMPA2O14732 288 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 UGDHO60701 494 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 UQCRC2P22695 453 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 HSD3B2P26439 372 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 RAB2AP61019 212 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 DPTQ07507 201 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 DLX2Q07687 328 aaPredicted RBP12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 TRAM1Q15629 374 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 SSX2Q16385 188 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 COMMD6Q7Z4G1 85 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 AMZ2Q86W34 360 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 TFGQ92734 400 aaPredicted RBP12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 GHSRQ92847 366 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 RAB7BQ96AH8 199 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 PHYHIPLQ96FC7 376 aa12.87□□□□□ -0.35
GTF3C1-203ENST00000562609 MEGF10Q96KG7 1140 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms